BtaINT0103613 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009017 | NR5A1
Description
Bos taurus nuclear receptor subfamily 5, group A, member 1 (NR5A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174403]
Coordinates
chr11:95531614-95534538:-
Coord C1 exon
chr11:95534397-95534538
Coord A exon
chr11:95532240-95534396
Coord C2 exon
chr11:95531614-95532239
Length
2157 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
CCCTCTGCCTCTGCCCACAGCTG
3' ss Score
12.47
Exon sequences
Seq C1 exon
GGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGCCAGAGCTGCAAGATCGACAAGACTCAGCGCAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGGATGCGCCTGGAAG
Seq A exon
GTGCGAGTGCCGTGCCTCCTACCCCTGACCTCTGACGGCGAGAGGGCAGGGGGTGGAGATGGGAGAAGGGGTGAGGGGAGGGTACCATAGGTCTTCTTGATGTTTCTGAGGCCAGGCAGTTAGTCCTTCACGTGAAATCAGGGCCGATCCTCCCTATGGGGGAGGGGTGAGAACCGATGCCGGTTTGGCTGAAGGGATGCGCATAGGACCAGCCTGGGGTGGGGTTGGGAAGTATCCAAAAGTGAACCCCAGAAAGAGGACCCTCTCCCCAGCCCTTGGGAGCAGAGCCCCACAGAGCTCCTCCCTCTGTGAGTTCTGTAACACCCCCACTGACATCCAACACCAAGCCAGAGTCAAGGTTTTCAGTACCTTTACTGGAGTTTAAGTCCCAGTGCCATCACTTACAGGCTGGGTGACATTGGGCAAGTCCCTTAACCTCTGAGCTGCAGACACCCCATGTGAAGTGAAAGTGAAGGTTGCTCAGTCCTGTCCAACTCTTTGTGACCCCATGGACTATATAGTTCATGGAATTCTCCAGGCCAGTATACTGGAGAAAGGAAAGTAGCCTTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAAACCCAGGTCTCCCGCATTGCAGGGGGATTCTTTACCACAAGGGAAGGGGCTTTTCAGTAGTACCTTCCTCCTTGAGCTAGTGAGAGAATTGTATGAAAAGCTCCTAGCATGGTACCTGAAATGTAGAAAATGCTCAACAGGTTAGCTGTTATTGTTATCCTTACTGATGTTATTATCCATCCAGCATCACTGTGCAGCCCTCACTCACCCAGACCACTCATCTCTTCGTCCGTTCATCCAGCCAGAAGGTTCACTCAGTTCATTCACTCAGCAGGTCCCTAGCCAGGCCCTAGAGAGCTGGGCAGTGGGGACCAAGTGCTCCTAGAGAACCCAGGCCCATCCTTGTCTCCCCACCCCCACCCCTAACTGTCTGTCCAGAGGGGAGGAAAAACGCTTCAGCAGGAAAGACTCACGTTCTTTGAGGGTGGACAGTCATAGGCTTCTACCCTGCTGGCCCCAGCCGGGCTGTGCGCCGAGCAGGCAGCTGTTGGTTAAAGTTTTTAAACGATGTAGAAGGCCCCTGGTGGCTCTGAAAGCTGCCGGGGCCAAAAGTCCTGCCACCTAGAGGAAGGACTCCCGATGGAAGGGGGATATCCTGTCCTGCCCCCAGAGCCCAGGTCCCCAGCTCCTGGGCCAGAGGGAGTGGAGCAGGGCTGCCCATTCCCAAGGCAGGAAGATTGGCCGGGTGGGCCCCAGGACACCCTCCTTGCTGAGCACTGGCCTCTCTCTCCTGTCCTCTCCCTTCTCTGGGAGCTCAGGGTGGGGTCCTGTCTGAGCAGGGGCAGGGGCCACACTTCGGCTGCAGAAATACACCTGTTGGGTCCAGCTGGTGACACATTCTTGGCCAGGCGGAGGGACATCTGGTCAGCAAGGGAGGTCCCTTCCCCCAGCCCAGAGCCCCAGCCAGCCCTTAACTCAGCTTCAAATTTGAAGGCAGCAGAGGAAGCCTGAGTCATTTTGCAACAGGGGTTCAACAGAGGTAGGCAGACAGTCAAGAAGCAGCTGGACCCTGGGAACCCACCTGGGAATGAGGCTGACCAGAGCCCACTTCCCGTCTCCACCTCCCTGCCAGGCCCTGTGCTGGGCACTTGAGCCCATTGCTGGGCCCCTGGAAGTTCTCAGCCTGTGTATGATAGCACTCAGTGGGATGAGAGGCCAGACATCTGGGTAAGAAGAGGATGCTGCCTGTGAACCCAGAACACTTTGGGTGTTTAGTAAAGCACCAGAGATGGAAAGGCTTTGAGACAGAAGGAATATCACAGGCAGGGTTGGGGACACGCCAAGCAGAGATGCAGAGAGATAGTAAGGTGGAAAGGAAAGGAGACTGGGGCTCGTGAGGGGTAGACAACGTGGCAAGGGCACCAGGGCCTTGAATGCCAGGTTAGGGGATTGACTCTTGTGAATGGCAGGTTAAGGGCACCGGAGGAGCCATGAGAGGTGCGGAGCTGGGGAGAGGCCCAATCAGATCCGTTTGGGAAAGAGTTGTGAGTGGAGTGGTAGGGAGGGTGGCCTGGAGGGGATGAGCCTGCCCCCCTCTGCCTCTGCCCACAG
Seq C2 exon
CTGTGCGCGCTGACCGCATGCGAGGCGGCCGGAACAAGTTTGGGCCCATGTACAAGCGGGACCGGGCCCTGAAGCAGCAGAAGAAGGCACAGATTCGAGCCAATGGCTTCAAGCTGGAGACAGGCCCCCCAGTGGGGGTGCCCCCGCCGCCCCCTCCCCCACCGGACTACATGCTGCCCCATGGCCTGCATGCATCTGAGCCCAAGGGCCTGGCCTCAGGTCCACCAGCTGGGCCACTGGGCGACTTTGGGGCCCCAGCGTTGCCTATGGCTGTGCCCAGCGCCCACGGGCCACTGGCTGGCTACCTCTACCCTGCCTTCCCTGGCCGCGCCATCAAGTCTGAGTACCCAGAGCCCTATGCCAGCCCCCCACAGCCCGGGCCACCCTACGGCTACCCAGAGCCCTTCTCGGGGGGGCCTGGTGTGCCCGAGCTTATCCTCCAGCTGCTGCAGCTGGAGCCAGATGAGGACCAAGTGCGGGCACGCATCGTGGGCTGCCTGCAGGAACCGGCCAAAGGCCGCCCCGACCAGCCTGCGCCCTTCAGCCTCCTGTGCAGGATGGCCGACCAGACCTTCATCTCCATCGTGGACTGGGCACGCAGGTGCATGGTCTTCAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009017:ENSBTAT00000011869:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.526
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(64.3=93.8),PF038549=zf-P11=PD(80.8=87.5)
A:
NA
C2:
PF0010425=Hormone_recep=PU(19.0=18.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development