HsaINT0115669 @ hg19
Intron Retention
Gene
ENSG00000136931 | NR5A1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:HGNC Symbol;Acc:7983]
Coordinates
chr9:127262369-127265499:-
Coord C1 exon
chr9:127265358-127265499
Coord A exon
chr9:127262995-127265357
Coord C2 exon
chr9:127262369-127262994
Length
2363 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
CCCTCTGCCCCTGCCCACAGCCG
3' ss Score
11.68
Exon sequences
Seq C1 exon
GGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGCCAGAGCTGCAAGATCGACAAGACGCAGCGCAAGCGCTGTCCCTTCTGCCGCTTCCAGAAATGCCTGACGGTGGGGATGCGCCTGGAAG
Seq A exon
GTGCGCGCCGCGCGGGCCTCGACCCCTGACCCCCCACAGCCTGAGGGGGTAGGGGGTGGGGGTGGGAGAGGGGCTGAGGGGATAGTACCATTGGCCTTCGCGAAGGCCCCTCGTGCGACATTAGGGCCCAGTCGCTGCAAGAGAACCGGGCGCTGGCGCTGGGTGGGCCTCGGGCGGGGAAGGGACGCTGGCAAGGCCAGCCTGGGTTGGGCTGAGAAGTATCCAAAAGTGAACCCTATGGAGATGACTCTTTCCCCAGCCCCTGCCAGGGCCCCAGCACAGGGTCGGCAGAGCTCCTCCCTCTGTGAGGAGGTCCCCATGCCCCCAAAATACCCAACCCCAGCCAGCAGAGGCCAAGTCCCAGTGCCCGCACTGTCAGTCAGGCTGGGTGACATTGGGCAAAATCCTTAACCTCTCTAAACCGCAGATTTCCCATGTGAAACATGGGCTTGGCCGGATGGAGCGGCTCATGCCTGTAATTCCAGCATTTGGGAGGCTGAGGCAAGAGGATCACTTGAGCCCAGAAGTTTAAGACCAGCCTGGGCAACATGGAGAAACCTTGTATCTATAAAATATAAAAAAGTAGCTGGGCGTGGTGACATGTGCCTGTAGTCCTAGCTACTCAGGAGGCTGAGGTGGGGGGATCACTTGAGCCTGGAAAGTCGAGGCTGCAGTGAGCTATGATCACACCACTCCACTCCAGCCTGGGCGAGAGGGAAACCCTGTCTCAAAAAATAAGTACATAAAAATAAAAAAGAAAGAAAAGAAAAGGCAGAAAGAGAAAGAAAGAAAAGAAAAATGGGCTTAACGGCAGCGCCTTCCTCCAGTGAGTGAGTGTGGGGATCGGTGCAGGCAAGCTGAAGGTGCCTAGGCGTTCATTGCCGCAGGTTAGCTGTCAAGCCCATCACGCTTTCCATTAGGATCTGCCCACCACCACCGCCCAGCCCCCACACATTCAGCTGCCCATCTGCTTGTCTGTCCGTCCATCCAAAGGGCTCTCTGGTTTATTGGCTCAGCCAGTGAGATTCCTTCCCGTCATGTTCTTAGCCAGGCCCTGAGGGGGCCGGGCAGTGGGGGACAATTGAATTGCCCCCAAGAAACCCAGGCCCCTCTTTGCCTCCCTACCCTCAACCCCAGCTCTCAGCCCAGAGAGGAGGAGGTAAGTTTTGGCAGGAAAGATTTGAGCTTCTGGAGGTGGCCGGTCACTGGACTGTGTGCTGAACAGGCAGTGGTTGATTAAGGTCTTGGAACAGTGTAGAAAGCCCCAGGTGGCTCTGAGAGTGGTGGACCACATGCCCTGCCACCTGGAGAAAGGACTCCTGGATGGGAGAGGGGACATCCTGTCCTGTCCCCAGAGCCCATGCCCCTAGTGCCAGGTCCCAAGGGGCCAGATAGCTGGCTGTTGTGGGCAGTAGAAACTCCCGTGCAGCCTGCGAGCAGCACAGCGCTGCCCACCCCAGGGGGCAGGAAGATTGGCCAGGCAGCCCCCCAGCCATCATCCCTGCTGAGCACCACCACCCCCTCTCTCCTGCTCTTTCCCCTCGCCCAGATCCCAGGGTGGGGCCCTGTCTGAGCAGGGGCGGGGGGCACACTCCAGCTGCAGAGATGTACCTGTTGGGTCTGGCTGATGACACATTCCTCGCCAGGCGGAGGAGCTTCTAGTCGGCAAGAGAGGTCCCCTCCCCCAGCATAGAGCCTTGGCCAGCTCTAAACTTGGCTTCACATTCGCAGCCAGTGAAGGATACTTGAGTCATTTTGAAGCAGGAGCTCAACAGTCAGGCAGTCAGTCAACAAACAGCTGGACCCTGGGGCCAGCGGTGAACAAGGCTGACCAGGGTCCCCTTCCGGTCACCATCTCCCTGCCAGGCCTTATGCTAGACACCTGAGCCCAGAACTTAGCCCGCAGGAGCACATGGCATGATCCACTCAGCATGATAAGAGTGGGCAAGGACAGGGCACCTGGGGCAAGGACAGTAGAGCCCGTTTGCATGAATCCAGGAGTGCTTCCTGGAAGTAGTGACATTGAGGCTGGGTGTTCAGCAAGCACAAGAGAAAAAAAAAAGTTTGAGTCAGAAGGAAAATGAAAGGCAGGGTGGAGGAGGAAGGAGATGTGTCAAACAGAGGAGTGGAGGTGAGTTCGGTGGAGTGGAAGGAGAGGGGTCTTAGCAGGGATTGCCTGAAAAGCTGAGCAGGGCCTTGAATGCCAGGCAAAGGAGACTGACTTCCCCTGTGGTCAGTGGGAGCCATGAAAGGGTGTTGAGCAGGGGAGAGAGCGGTCAGATTTGTTTGGAAAGGATCTGTGGTGGGGCAGCATGGAAGGGGGCTTAGAGAGGGTGAGTCTGACCCTCTGCCCCTGCCCACAG
Seq C2 exon
CCGTGCGCGCTGACCGTATGAGGGGTGGCCGGAACAAGTTTGGGCCGATGTACAAGCGGGACCGGGCCCTGAAACAGCAGAAGAAGGCACAGATTCGGGCCAATGGCTTCAAGCTGGAGACAGGGCCCCCGATGGGGGTGCCCCCGCCGCCCCCTCCCGCACCGGACTACGTGCTGCCTCCCAGCCTGCATGGGCCTGAGCCCAAGGGCCTGGCCGCCGGTCCACCTGCTGGGCCACTGGGCGACTTTGGGGCCCCAGCACTGCCCATGGCCGTGCCCGGTGCCCACGGGCCACTGGCTGGCTACCTCTACCCTGCCTTTCCTGGCCGTGCCATCAAGTCTGAGTACCCGGAGCCTTATGCCAGCCCCCCACAGCCTGGGCTGCCGTACGGCTACCCAGAGCCCTTCTCTGGAGGGCCCAACGTGCCTGAGCTCATCCTGCAGCTGCTGCAGCTGGAGCCGGATGAGGACCAGGTGCGGGCCCGCATCTTGGGCTGCCTGCAGGAGCCCACCAAAAGCCGCCCCGACCAGCCGGCGGCCTTCGGCCTCCTGTGCAGAATGGCCGACCAGACCTTCATCTCCATCGTGGACTGGGCACGCAGGTGCATGGTCTTCAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136931-NR5A1:NM_004959:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(64.3=93.8)
A:
NA
C2:
PF0010425=Hormone_recep=PU(19.7=67.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)