GgaINT0126000 @ galGal4
Intron Retention
Gene
ENSGALG00000001080 | NR5A1
Description
steroidogenic factor 1 [Source:RefSeq peptide;Acc:NP_990408]
Coordinates
chr17:9439266-9442323:-
Coord C1 exon
chr17:9442182-9442323
Coord A exon
chr17:9439907-9442181
Coord C2 exon
chr17:9439266-9439906
Length
2275 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTCTGCTCCTCTGCCCACAGCCG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GGCTTCTTCAAGAGGACCGTGCAGAACAACAAGCACTACACCTGCACCGAGAGCCAGAACTGCAAGATCGACAAGACCCAGAGGAAGCGCTGCCCCTACTGCCGCTTCCAGAAGTGCCTGACCGTGGGGATGCGCCTGGAAG
Seq A exon
GTAAACAAGGGCGGCCCGGAGGGGGGGTGGGTGCCGTCCCCTCGCCGCGGTCGCTCCGTCCCCGGCGCCCCCCGGGCCGGGAATTGCCGCGGCGGCTCCGATTCCGTTTTTCCTCCCCAAGTCAACGAAAAATTCGTTTTGTCGCCCTGTATTCTGCTTTTCGTTTCTTTGTTTTTGTTTTGTTTCTCCCGGGTTTTGGCTGCCGAGGTTTCAACTTTCCGGGACTGTCTTTGCTTGGCAGAACGTTGGGAAATAGCTTAGAAATCATTGTTTTCCTTAATCGCACAATTCCAGAAGCCGAGACTTAAGGAAAACGTTTAATATTGCGAGACTGACACGAAAACTGCGGGAGATCCGCCGCAAATCAGTTTTTCTCTTAGCGCGGCTCCGGGCAGCGCGGAAACACGCGGTAATCCGCCGAGAGCCGCGCATCGCAGCGCTCAGCCCCACCGCGACGTGACGGTCGGGCTGTGGTGTCCCCGAGCCCTACGCCGGGATTTCTGCCGCGCTCGGCACACGCGAAGCGCGCTGAGGACCCTCCGCTGCAAACGTGGATAGGAAATCCCCCAGCTGTGCTCGCGCCCCTTCCCCGGCCGCGGTGGCAGCGGGCGCGTGGCGGGGCGGCACCGCTCCTCGTGCGCTCCGTGCAGTGCCCGACCCCACGGCGGGGCTGCTCCGCGCTCTGCGGCAGCTCTGGGCTCGGGACGGGCGCTGGGAGCGAGGGGAGGCAGCGGCGGCGTTTGCGCCTTCGGGGTGGGGACGGGCACGCTCCGCTTTCCTATTTTGGGCGGTTTTCGTGCGGCGGAGCCCGTTCGGCCCCGCGTTTTGCCCGGGCTGCGGCAGCCCGCTCACCCCTTTTTGTTTATCTCCTCGCTGCTCGCCGCAGCAGCTCACCAAGGAGGAGGCACCCGCAGGCGAACGGCGTTCCCGTGGGACTCTTTTGTGTTAAAAACACGAGCCCACCTTGCCTTTGTGAACGGTGTTTTTCGGTCAGGGAGTCTGAGCTACACGGGGAATCCTCCAGCAAGACGGGACAAAATCCAGCGGGATTTCAGAACGGATCCGGTCTTGCAATGGAAAAGTGGAGCGCGAGGGAACACGAGAGCCCCTTCCCTCTTTGTGCTCGCGCTTCGGGAGCAAAGGAGGGGAGCAGCGTTCGCCACGGGAGGGTTCTGTGTGAGCACCTCCCGCACGTGCAGGGCCGGGCTCTGCTCCGTGGCCATCGCCCTGCCCGGCCTCGGGCCGTGGGGGGAAAACCGTTCATTATTTGGAGGACGGGGGAGATTTGTGCTCTCGGAGCACTGCAGTGCAGACGGGGGTGCGGGCTGGGACCCAGGGCTGCGGGTGGAGGCCTGGCACAGCCGGCGCTCTCAGTGGTGCACCCCGAAAGCAGCGGGGCTCCCATAGCCCAAACGGAGGCATCCCAGTATCCAGGCACCCCAGTATCGAGGCATCCTTGCGTTGCGCGGCTGGAGAAGCTGTTTCCACGAATAACGAACGAGGGAGGAAGCGCAGAGCAGCTCCCCGGGGAGCACATTCCTGCTTTCCTGCAAATGCTGCTCCCGGCCGTGCCGCCGCCCCTCCAGTCTGCGTGGAGAAAGTCTCGGGGCTTGCAGCACCCGCGGGGCACGCGGGCAAAGGGAGGCAGAGGAAGGAGGGGGGCACAGAACAGAGCAGCCCGCTCTCGTGGGCTGCGAACCCGCCCAGGGGCTGTTCCCTTCCACGCGGGGCCGCGCGGTGCTTGCTGGCTCGCTCCCCTCTCCGCTGCCGGGGCTGTGCGGGTGGGCCGGCGGCCGCCATGCCGGGGCCAAGCTTGTGCTGCAGAGAAGCACCTGCTCGGGTGACACATTCTTGGGTTTAACTCGAGGCTCAGAGCAGCCTCTGCTGCGCCGCAGCAGCAAGCAGGGCGATGGGGAAAGGGGCAGCGGGGAGAGTGCTCTGGAAGATGGGAGAGGATTGCAAAAGGCAGCACAGTCCGGAATGAAATCCCAGGGCTGGTCCAGGCCCGGGGGCTGTGGAAATGAAAGCAGCGTCAGGCACCCTAATCTGCCCGAGCTCCCGGGGCTCTGCTCTGTGCGCTTTACTTCCGTGTGTTTCATACACCCGAGCATGTCTTCCTCCCTCACCGTGCCTGGAGCTGCTGCAGTGCAGCACACCCCGACCCACAGCACAGCTCTCTGGGAAGGGGGCCCACCACCCCCAGCCCCATCAGTCCCCGTCCCCCCCATGCCCCGGTCCTGCTCTGCTCACCACAGCTCTGCTCCTCTGCCCACAG
Seq C2 exon
CCGTGCGCGCGGATCGGATGCGCGGCGGGAGGAATAAGTTTGGGCCCATGTACAAACGGGACCGTGCCTTAAAGCAGCAGAAGAAAGCGCTGATCCGCGCCAACGGCTTCAAGCTGGAGACGGTGCCACAGATCGTGTCACCTGTGCAGAATGACTACGGGCTGTCCTCCACCATCCACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACGCCTGCTGACTATGAACGCGGCCCCTACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCGCGCCATCAAGTCTGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTACCCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGGCTCGCATCCTGTCCTGCCTGCAGCAGGAGCAGGGCAAGGGCCGGCATGAGAAGCTCAGTACCTTTGGCCTCATGTGCAAGATGGCTGACCAGACGCTGTTCTCCATCGTGGAGTGGGCGCGGAGCTGCATCTTCTTCAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080:ENSGALT00000001616:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(64.3=93.8)
A:
NA
C2:
PF0010425=Hormone_recep=PU(20.6=20.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]