GgaINT0126000 @ galGal3
Intron Retention
Gene
ENSGALG00000001080 | NR5A1
Description
NA
Coordinates
chr17:10159187-10162244:-
Coord C1 exon
chr17:10162103-10162244
Coord A exon
chr17:10159828-10162102
Coord C2 exon
chr17:10159187-10159827
Length
2275 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
CTCTGCTCCTCTGCCCACAGCCG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GGCTTCTTCAAGAGGACCGTGCAGAACAACAAGCACTACACCTGCACCGAGAGCCAGAACTGCAAGATCGACAAGACCCAGAGGAAGCGCTGCCCCTACTGCCGCTTCCAGAAGTGCCTGACCGTGGGGATGCGCCTGGAAG
Seq A exon
GTACCGCGGGGCGGCCCGGAGGGGGGGTGGGTGCCGTCCCCTCGCCGCGGTCGCTCCGTCCCCGGCGCCCCCCGGGCCGGGAATTGCCGCGGCGGCTCCGATTCCGTTTTTCCTCCCCAAGTCAACGAAAAATTCGTTTTGTCGCCCTGTATTCTGCTTTTCGTTTCTTTGTTTTTGTTTTGTTTCTCCCGGGTTTTGGCTGCCGAGGTTTCAACTTTCCGGGACTGTCTTTGCTTGGCAGAACGTTGGGAAATAGCTTAGAAATCATTGTTTTCCTTAATCGCACAATTCCAGAAGCCGAGACTTAAGGAAAACGTTTAATATTGCGAGACTGACACGAAAACTGCGGGAGATCCGCCGCAAATCAGTTTTTCTCTTAGCGCGGCTCCGGGCAGCGCGGAAACACGCGGTAATCCGCCGAGAGCCGCGCATCGCAGCGCTCAGCCCCACCGCGACGTGACGGTCGGGCTGTGGTGTCCCCGAGCCCTACGCCGGGATTTCTGCCGCGCTCGGCACACGCGAAGCGCGCTGAGGACCCTCCGCTGCAAACGTGGATAGGAAATCCCCCAGCTGTGCTCGCGCCCCTTCCCCGGCCGCGGTGGCAGCGGGCGCGTGGCGGGGCGGCACCGCTCCTCGTGCGCTCCGTGCAGTGCCCGACCCCACGGCGGGGCTGCTCCGCGCTCTGCGGCAGCTCTGGGCTCGGGACGGGCGCTGGGAGCGAGGGGAGGCAGCGGCGGCGTTTGCGCCTTCGGGGTGGGGACGGGCACGCTCCGCTTTCCTATTTTGGGCGGTTTTCGTGCGGCGGAGCCCGTTCGGCCCCGCGTTTTGCCCGGGCTGCGGCAGCCCGCTCACCCCTTTTTGTTTATCTCCTCGCTGCTCGCCGCAGCAGCTCACCAAGGAGGAGGCACCCGCAGGCGAACGGCGTTCCCGTGGGACTCTTTTGTGTTAAAAACACGAGCCCACCTTGCCTTTGTGAACGGTGTTTTTCGGTCAGGGAGTCTGAGCTACACGGGGAATCCTCCAGCAAGACGGGACAAAATCCAGCGGGATTTCAGAACGGATCCGGTCTTGCAATGGAAAAGTGGAGCGCGAGGGAACACGAGAGCCCCTTCCCTCTTTGTGCTCGCGCTTCGGGAGCAAAGGAGGGGAGCAGCGTTCGCCACGGGAGGGTTCTGTGTGAGCACCTCCCGCACGTGCAGGGCCGGGCTCTGCTCCGTGGCCATCGCCCTGCCCGGCCTCGGGCCGTGGGGGGAAAACCGTTCATTATTTGGAGGACGGGGGAGATTTGTGCTCTCGGAGCACTGCAGTGCAGACGGGGGTGCGGGCTGGGACCCAGGGCTGCGGGTGGAGGCCTGGCACAGCCGGCGCTCTCAGTGGTGCACCCCGAAAGCAGCGGGGCTCCCATAGCCCAAACGGAGGCATCCCAGTATCCAGGCACCCCAGTATCGAGGCATCCTTGCGTTGCGCGGCTGGAGAAGCTGTTTCCACGAATAACGAACGAGGGAGGAAGCGCAGAGCAGCTCCCCGGGGAGCACATTCCTGCTTTCCTGCAAATGCTGCTCCCGGCCGTGCCGCCGCCCCTCCAGTCTGCGTGGAGAAAGTCTCGGGGCTTGCAGCACCCGCGGGGCACGCGGGCAAAGGGAGGCAGAGGAAGGAGGGGGGCACAGAACAGAGCAGCCCGCTCTCGTGGGCTGCGAACCCGCCCAGGGGCTGTTCCCTTCCACGCGGGGCCGCGCGGTGCTTGCTGGCTCGCTCCCCTCTCCGCTGCCGGGGCTGTGCGGGTGGGCCGGCGGCCGCCATGCCGGGGCCAAGCTTGTGCTGCAGAGAAGCACCTGCTCGGGTGACACATTCTTGGGTTTAACTCGAGGCTCAGAGCAGCCTCTGCTGCGCCGCAGCAGCAAGCAGGGCGATGGGGAAAGGGGCAGCGGGGAGAGTGCTCTGGAAGATGGGAGAGGATTGCAAAAGGCAGCACAGTCCGGAATGAAATCCCAGGGCTGGTCCAGGCCCGGGGGCTGTGGAAATGAAAGCAGCGTCAGGCACCCTAATCTGCCCGAGCTCCCGGGGCTCTGCTCTGTGCGCTTTACTTCCGTGTGTTTCATACACCCGAGCATGTCTTCCTCCCTCACCGTGCCTGGAGCTGCTGCAGTGCAGCACACCCCGACCCACAGCACAGCTCTCTGGGAAGGGGGCCCACCACCCCCAGCCCCATCAGTCCCCGTCCCCCCCATGCCCCGGTCCTGCTCTGCTCACCACAGCTCTGCTCCTCTGCCCACAG
Seq C2 exon
CCGTGCGCGCGGATCGGATGCGCGGCGGGAGGAATAAGTTTGGGCCCATGTACAAACGGGACCGTGCCTTAAAGCAGCAGAAGAAAGCGCTGATCCGCGCCAACGGCTTCAAGCTGGAGACGGTGCCACAGATCGTGTCACCTGTGCAGAATGACTACGGGCTGTCCTCCACCATCCACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACGCCTGCTGACTATGAACGCGGCCCCTACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCGCGCCATCAAGTCTGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTACCCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGGCTCGCATCCTGTCCTGCCTGCAGCAGGAGCAGGGCAAGGGCCGGCATGAGAAGCTCAGTACCTTTGGCCTCATGTGCAAGATGGCTGACCAGACGCTGTTCTCCATCGTGGAGTGGGCGCGGAGCTGCATCTTCTTCAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080:ENSGALT00000001616:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]