MmuINT0034532 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34983448-34985335:+
Coord C1 exon
chr2:34983448-34983557
Coord A exon
chr2:34983558-34985140
Coord C2 exon
chr2:34985141-34985335
Length
1583 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGGGGGCTGGGGAGAATTAGATT
3' ss Score
-8.87
Exon sequences
Seq C1 exon
CACAAACTCGACTGTCAGAACTACACCATGAAATAGAAACAGCAGAACAAAAAGTATTACGGGCTACTCAAGAATTTAAACAACTGGAAGAAGCTATACAACAAAAAAAG
Seq A exon
GTATGTGAATCATGCCAGAGAAATCACTGTTAATGTGAGCTTGCTTCCTACCTGTAAAACTGCAGTAGTGGTGGTGCTTGCCTTTAATCCCAGCACTGAGAAGGAAGAGGCAGGAGGAACTCTGAATTTGAGGCCTGCTTGGTCTATAGAGTGAGTTCCAGACCAGCCAGGGATATTCAGCCATATAAATCATTTTGAAATTAATTATTGGATTAGTGTAGACTAGAATATGGTTACAGTATTTTATTCATAATGATATCCTGTTAATATTTCATAAAATATGTAGAAATAAATTACTTAAAAAATTCAGGTGGGGTGGCACATGACAGGCAGGCAAGTATCTGAGTTCAAGGCCAGTCTGGTCTATAGAACAAGCTCCAGGACAGCCAGGGCTAGACAGAGAAACATTGTCTTGAGAAACCCTGTCTCAAAAAAACCAAACCAACCAACCAAACAATATATTACTTATAAGAGTAATTACTGCTCTTCCAGAGGACCAGAGTTTGGTTTTGGATTTTTGTTTTGTTTGTTTTGTTTGTTTTGTTTTGTTTGTTTTTTTTTAAGTTACTGTGTCAACCCTCAGAACTCACTGGTAGACTATCTCCATATTTAAACTGTAGTACACCAATTCATAAAATGTCTCAAGTCACACAGTCTTGGTCCTATGACCTCCTAATATGACATTGAGGAAGACACCTGGATTTCCCGTGATGTTATTGTCCTACACGTGGAACTGCAGCACTGATAGAGCACACTGTTGATCCCAGCGCACGGGAGTAAGAGGCAGGCTGATTTCTGTGAGTTCTGAGGTCAGCCTGGTCCAAATAGTGAGTTCTAGGCCATCCAAGGATACATAGCAAGACCCTATCTCAAAAATAAATATAATAAATTGCCGTGGTATCTTTCTACCTTACATGTTTCAAGGATTACAAGGTATGCAATTTAGAGTCGTACCTGCTGCATGTCCATGCATCAAGTCAGCCATTCTACTGCTGTGATGATGACAGCTTTAAGTGCACTTGTCACCACATTCCCAGTGTTCATAAGCTTTTAGAGGTGGGGTTTCTACCTATAATTAGCATAAAACTACAAACTGCATAGAGACTGCCTAGCTGTCTTAGCTGCTTTTCAGTTGCTATGACAAATCACCGTGACCAAGGCACTTTATAAAAGAACCTGTCTAATTTGGGGACTCGCAGTTCTAGAGAGTTAGAATCTATGACCTTGTGGCAGGGTGCATGGCAGCAGGCAGGCAGGCATGGCACTGGAGTAGTAGCTGAGAGATCACAACACAAGGCAGAAAGACCTGACTGGGAATGACTTGGGCTTTTGAAACTTCCGAGCCTGTAACACCTCCAACAATGCCAAACCTCTTAAATCTTCTAAAACAACTGGAGACCAAGTATTCAAATACATAAGCATGTGGGAACAATTCCCATTCAAAGCACAACACTAGACAATTACCACAGCTCTTACTTTAAAAGTCTTCTATAACAGAGTATTTTTGAAGTTATAGGTGCTAGCTTCATAAATTGTTGTTGCTCTCCTTTATTAATTATGTGCTGGGGGCTGGGGAGAATTAG
Seq C2 exon
ATTTCAGAAGCAGAGAAAGACCTCCTTCTCAAGCAGTTGAGTGGTAGACTACAACATCTAAACAGATTACGCCAGGAAGCTCTGGACCTAGAAATACAGATGGAAAAGCAAAGAAAAGAAATTGCCGAAAAGCATGAAGAGATCAATACCGTGCAGCTAGCCACAGACAGCCTGGATCCCAAAGACCCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.529
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(22.5=100)
A:
NA
C2:
PF131661=AAA_13=PD(37.5=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAACTCGACTGTCAGAACT
R:
TGTTTTGGGTCTTTGGGATCC
Band lengths:
304-1887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: