MmuINT0034532 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35127928-35129815:+
Coord C1 exon
chr2:35127928-35128037
Coord A exon
chr2:35128038-35129620
Coord C2 exon
chr2:35129621-35129815
Length
1583 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGGGGGCTGGGGAGAATTAGATT
3' ss Score
-8.87
Exon sequences
Seq C1 exon
CACAAACTCGACTGTCAGAACTACACCATGAAATAGAAACAGCAGAACAAAAAGTATTACGGGCTACTCAAGAATTTAAACAACTGGAAGAAGCTATACAACAAAAAAAG
Seq A exon
GTATGTGAATCATGCCAGAGAAATCACTGTTAATGTGAGCTTGCTTCCTACCTGTAAAACTGCAGTAGTGGTGGTGCTTGCCTTTAATCCCAGCACTGAGAAGGAAGAGGCAGGAGGAACTCTGAATTTGAGGCCTGCTTGGTCTATAGAGTGAGTTCCAGACCAGCCAGGGATATTCAGCCATATAAATCATTTTGAAATTAATTATTGGATTAGTGTAGACTAGAATATGGTTACAGTATTTTATTCATAATGATATCCTGTTAATATTTCATAAAATATGTAGAAATAAATTACTTAAAAAATTCAGGTGGGGTGGCACATGACAGGCAGGCAAGTATCTGAGTTCAAGGCCAGTCTGGTCTATAGAACAAGCTCCAGGACAGCCAGGGCTAGACAGAGAAACATTGTCTTGAGAAACCCTGTCTCAAAAAAACCAAACCAACCAACCAAACAATATATTACTTATAAGAGTAATTACTGCTCTTCCAGAGGACCAGAGTTTGGTTTTGGATTTTTGTTTTGTTTGTTTTGTTTGTTTTGTTTTGTTTGTTTTTTTTTAAGTTACTGTGTCAACCCTCAGAACTCACTGGTAGACTATCTCCATATTTAAACTGTAGTACACCAATTCATAAAATGTCTCAAGTCACACAGTCTTGGTCCTATGACCTCCTAATATGACATTGAGGAAGACACCTGGATTTCCCGTGATGTTATTGTCCTACACGTGGAACTGCAGCACTGATAGAGCACACTGTTGATCCCAGCGCACGGGAGTAAGAGGCAGGCTGATTTCTGTGAGTTCTGAGGTCAGCCTGGTCCAAATAGTGAGTTCTAGGCCATCCAAGGATACATAGCAAGACCCTATCTCAAAAATAAATATAATAAATTGCCGTGGTATCTTTCTACCTTACATGTTTCAAGGATTACAAGGTATGCAATTTAGAGTCGTACCTGCTGCATGTCCATGCATCAAGTCAGCCATTCTACTGCTGTGATGATGACAGCTTTAAGTGCACTTGTCACCACATTCCCAGTGTTCATAAGCTTTTAGAGGTGGGGTTTCTACCTATAATTAGCATAAAACTACAAACTGCATAGAGACTGCCTAGCTGTCTTAGCTGCTTTTCAGTTGCTATGACAAATCACCGTGACCAAGGCACTTTATAAAAGAACCTGTCTAATTTGGGGACTCGCAGTTCTAGAGAGTTAGAATCTATGACCTTGTGGCAGGGTGCATGGCAGCAGGCAGGCAGGCATGGCACTGGAGTAGTAGCTGAGAGATCACAACACAAGGCAGAAAGACCTGACTGGGAATGACTTGGGCTTTTGAAACTTCCGAGCCTGTAACACCTCCAACAATGCCAAACCTCTTAAATCTTCTAAAACAACTGGAGACCAAGTATTCAAATACATAAGCATGTGGGAACAATTCCCATTCAAAGCACAACACTAGACAATTACCACAGCTCTTACTTTAAAAGTCTTCTATAACAGAGTATTTTTGAAGTTATAGGTGCTAGCTTCATAAATTGTTGTTGCTCTCCTTTATTAATTATGTGCTGGGGGCTGGGGAGAATTAG
Seq C2 exon
ATTTCAGAAGCAGAGAAAGACCTCCTTCTCAAGCAGTTGAGTGGTAGACTACAACATCTAAACAGATTACGCCAGGAAGCTCTGGACCTAGAAATACAGATGGAAAAGCAAAGAAAAGAAATTGCCGAAAAGCATGAAGAGATCAATACCGTGCAGCTAGCCACAGACAGCCTGGATCCCAAAGACCCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(22.5=100)
A:
NA
C2:
PF131661=AAA_13=PD(37.5=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAACTCGACTGTCAGAACT
R:
TGTTTTGGGTCTTTGGGATCC
Band lengths:
304-1887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types