GgaINT1009806 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8353040-8353571:+
Coord C1 exon
chr17:8353040-8353152
Coord A exon
chr17:8353153-8353376
Coord C2 exon
chr17:8353377-8353571
Length
224 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGC
5' ss Score
6.02
3' ss Seq
CCTCCTGATGCCATCTCCAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
CAGCACAAAGGAGATTAGAAGAGCTGCAAAATGCAATAGGAAAGGCAGAGCAACAAGTTTTGGAAGTAACAGGAGAACTGCAACAACTGGAGGGTGCTCTGGCTCAGAAAAAA
Seq A exon
GTACGCAAAAGAGTTACTATGTGGATAGCAGGGGAAAGTGTTTGAAACAGTGTTCCCTTTTTTACGGGGCCATTGTATATAAGTACAATGAAGATTCAAATAATTAGTAGGTCATACTCAGACACCTCTTGGGTGTCTAACCTAGCAGTCTGGTTTAATAGTTTCTCAATCAGCTTCTTGTTTTAGTATAACTGTTTTAGCCAACCTCCTGATGCCATCTCCAG
Seq C2 exon
GTCTTACAGGCCAACAGGGAGGATCTGGAGCAGCAGCTGAGTAAGAAGATACAAATACTGCATCAGCTACAAGAGGGAGCCTTAGCACTGGAGAAACAAATGGAGAAACAGAAAAGAGAAATAGGGAAAAAGCAGAAAGAGCTTGAAGACCTGAAGAGTTCTCTTGCTTCTGTAAACTCTAAAGAAGCAAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAAAGGAGATTAGAAGAGCTG
R:
AGAGTTTACAGAAGCAAGAGAACTCT
Band lengths:
292-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]