BtaINT0040503 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112441690-112444001:+
Coord C1 exon
chr8:112441690-112441809
Coord A exon
chr8:112441810-112443813
Coord C2 exon
chr8:112443814-112444001
Length
2004 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAG
5' ss Score
1.6
3' ss Seq
TGGGGGGAACTAGATTTCAGAAG
3' ss Score
-6.09
Exon sequences
Seq C1 exon
CACAAGCTCGATTATCAGAACTGCATGATGAAATAGAAAAGGCAGAACAACAAATTTTAAGAGCCACTGAAGAATTTAAACAACTGGAAGAAGCCGTACAACTTAAAAAGGTAGGGAAAA
Seq A exon
GTAAAGCTGCATTGCTAAGAGGAAAGGCCAAGAATGGAATGTGCCTCCCTCTTCATAAATGTGTAAAGACTGTCTTCAAACAGTCTTGAAATCAGTGCTGCCTACTTAATTGTGGAATAACAAATTTCGAGTCAGACATGGTTCTAGCATTTTCCAGTTTCATTTCCTACCATTCAGGATGACATCCTATTAGCATTTTATAGAGTGTACAGGTATACATTACTTTTACATAAAAAAGATACATTCCATTTACTCTATTATGAAAGTGTCTAATTTATTAAGGGAAGCTGCTTCCTAATATCTTTCTTAATTTAATTAAACAGTCCCCACCATTAAGATCCTGGGACCTAGATTAAGAGCCAGAAGACATCTCTGTAATAACATTATTAAACACAGGTGGCAAAAATATAAGTGATATAAAATGCAGTATATAAAAAGATGTTGTTTATAAAGAAGTAAACAGCTCAAAACCTGTGACGTAGTTGAATAGGAAGAAAGTTCAAAAAAGGAAGTATTCTGACATTTTAGTTTTTAAGTATGTAAAAGGTTTTAATTATTTGCAACTTCTAAAAATCAGTATTTCAAAATTATGTTGGTAACTGTATTCACACCATAGTAAGTAGAAAAGAACATGAAGTCCAAGTTATATATTCTTTTAAAAAGATGCCCTGTGTTGCTACTTCCAGACTGTTGAGTAACCAGAAACTGAGTCGGGTTTGTGTGGCAGTTGCTGACTGGCTGCGCCCTGAGTAATGAACAGCTGTGTTCCCCCCACAGGGACAGGAAGTAGGCAACAGATAGTAAAAATGAGTTTAGAAGACATGTGTAGATAAACAGCACAGGTTGTAGGGAGGGAAAAACGAAAATTAGGAGAAACGATAAAAAGTTTGTAGAGTGTGGCAGCCCACAGAGGCCTCACTGAGGGGGCGACACTTAGGCTGAGAAAGGATGACAGGGAGCCAGTGAGGCCTTCCAGGCAGAGGTGACAGAGTGTGCAAAAGGCTTCAGACTGAAGAGTCCTCTGCAGAGTGAGGGAGAGTGCAGTGGCAGATGAGGTTAAAGCTCATGCCAGGCATCATAGACCACTTTAAGGGGTACAAGTTTTATCCTGAATGGAATAGGAAACCTGTGAGGGACTTTAGGTGGTAGAGTGGCTGATCTTATTTGTATTTTTATAAGGTCACTCTCCTACTTGATGAGAGTGAAGCGGGCTGAGAGAGGTGGGAAGAATGGAGGTGTGTACATTGGTTTGGAGGCTGTTGTCTAGTACAGGCAAGATACGATAACGGCTTGGACTACAAAGGTGATGGTAGTCATGGAGAGAAAGGAGATTAGGTGAAAATCTGGCAGGAGAAATGATGGGATGAGGCGGACAGAGCTGTCAAGAATAGTTTATAAGAATTTACAATTTAAAAGAATAATTAAATAAGAATGTTTTAAAACAGCACTGGCCAAAGCTTTATATAGATAAATTGATAGAAGTAAAAAATGTACAAAATACTTAATAGATCCTTATAAAATGTACTTAGGGAAAAAAATAGCTATTTTGTGAGTTATTTAAATATTTTTAAAATATTTATATTTTTAAATATAATAAAGCCTTATAATAAAGGCTTTTCATTACACTGTCAGTTAGTTTTATATTCTAATACAAGGGTAAGTGTTGTATAAAGTCAACTACCATTAAGGCTATGGTTATTATTATTAATAATTTATGTTATTTGTACTAGAATGAAAAATTTCATTACTACCTGCATTTATTTTTTCATATGCTCTTATAAAATGCTCTTATAAAATAAACATTTTTACATGTAATAAAGATAAAAGTATACGATATCGTGGATTGCCTAGATAACTCTTACATTTTACTTTTACTAAAAAAATCTGGCAGAGCATACGATTATACTTTTTAAAATTGTACTAGTTGTTTTCTGTAAATTTGAAAATCAGCGTTTCTGTCCTTTGCTAATTGTGTATTGGGGTGTGGGGGGAACTAGATTTCAG
Seq C2 exon
AAGCAGAGAAAGACTTTCTTCTCAAGCAGCTGAGTGGCAGGATACAGCTTCTAAATAAATTACGCCAGGAAGCTCTTGATCTAGAAGTGCAGATGGAAAAGCAAAGAGGAGAAATTGCTGAAAAGCAGGAGGAGATCAAGGACCTCCAAAGAGTTATTGATAGTCTGGATTCCAAAGACCCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]