RnoINT0038590 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14321625-14323292:+
Coord C1 exon
chr3:14321625-14321734
Coord A exon
chr3:14321735-14323097
Coord C2 exon
chr3:14323098-14323292
Length
1363 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTGGGGGCTGGGAGAATTAGATT
3' ss Score
-8.64
Exon sequences
Seq C1 exon
CACAAACTCGACTGTCAGAACTACACCATGAAATAGAAGCAGCAGAACAGAAAGTATTACGGGCTACTCAAGAATTTAAACAACTGGAAGAAGCTATACGACAAAAAAAG
Seq A exon
GTATGTGGCTCCTGCGGGACAAGTCACGGTTACTGTGGGGCTGGATCATGCGGAACAAGTCACGGTTACTGTGGGGCTGGATCATGCGGAACAAGTCACGGTTACTGTGGGGTTGCTTCCTGCCTGTGAAACTGCAGTAGTTGTGACACATCTTTAATCCCAGAACTCAGGAGGAAAAGGGAGGAGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAAAGAGCTCCAGGACAGCCAGGACTACACAAAGAGACATTGTCATCAGAAACCCTGTGTCAAAAAACCCCAGAACAAACAAACAAATAATATATTACTTAAAATTGACAAAAGGTGCTGAGAGGTGGGTTAGTAGATGAGAGCAATTACTGCTCTTCTAGGGGACCAGAGGTTGGCTTTTAACGCCCACATTAGGCAGCTAACAATTACAACTGCCTGGAACCCCAGCTCCAGAGGCGTCCAACACTTCCTGCCTCCACAGGCATCCACTTTCACATGCACAGATTCACATTCAGGTACAACATAATTGAAAGAAGAAAAATAAATTTTAAAAAGTTACACAAAGGGCTTGGGGAGAGGGCTCAGTGGTTAAAAGCACTGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGTATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATACATGAAATAAACAAATCTTAAAAAAAATTACAGAAAAAGATGTGTTTGGTCTCCTGTACTGTGTTGCTTCCTTAGACTTCTTCTAAGACTCTTTACCTGGGACTTAGGTTAAGAACTAAAGAACACCTTTGCTGTGGCATGGACATTGTCAAACACCAACTAGTGGTGGGGGTGGGGGTGGGGTGGGAGTGGGGGCGGGGTGACAGGAATTACTTTCAGCAATTACCAGAGTATTTCATGGAGAAGTAAGTAGTTCAAATCCATGTTGTAATTGCATAGGTTAATTTTTTTTTTATGTATTTTGGATTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCCGGGAACCGAACCCAGGGCCTTGCGCTTCCTAAGCAAGCGCTCTACTACTGAGCTAAATCCCCAACCCCTTGGATTTTTTTTGACACAGGGTCTCATGTAACCCAGGATGACCTGGAAGTTGCTATATTCAAATTTATGAGCATGTGGAAACAATTTTCATTCAAACCACAATGTTAGCCAGTTCCCACATCTCTTATTTTAAAAGTTTTCCATAACAGTAATTTTGAAGTTAGGGTTGCAAGCTTCATAAATTGTTGTTGCCTTCCTTTGTTAATTATGTGCTGGGGGCTGGGAGAATTAG
Seq C2 exon
ATTTCAGAAGCAGAGAAAGACCTTCTTCTCAAGCAGTTGAGTGGTAGACTACGACACCTAAACAAGTTACGCCAGGAAGCTCTGGATCTAGAAGCTCAGTTGGAAAAGCAAAGAAAAGAAATTGCTGAAAAGCATGAGGAGATCAACAGTGCGCAGCTGGCCACAGACCTCCTGGACTCCAAAGACCCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.446
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAACTCGACTGTCAGAACT
R:
GCTTTGGGTCTTTGGAGTCCA
Band lengths:
303-1666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]