GgaALTA1008937-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8353040-8353571:+
Coord C1 exon
chr17:8353040-8353152
Coord A exon
chr17:8353377-8353385
Coord C2 exon
chr17:8353386-8353571
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGC
5' ss Score
6.02
3' ss Seq
CCTCCTGATGCCATCTCCAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
CAGCACAAAGGAGATTAGAAGAGCTGCAAAATGCAATAGGAAAGGCAGAGCAACAAGTTTTGGAAGTAACAGGAGAACTGCAACAACTGGAGGGTGCTCTGGCTCAGAAAAAA
Seq A exon
GTCTTACAG
Seq C2 exon
GCCAACAGGGAGGATCTGGAGCAGCAGCTGAGTAAGAAGATACAAATACTGCATCAGCTACAAGAGGGAGCCTTAGCACTGGAGAAACAAATGGAGAAACAGAAAAGAGAAATAGGGAAAAAGCAGAAAGAGCTTGAAGACCTGAAGAGTTCTCTTGCTTCTGTAAACTCTAAAGAAGCAAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-16-17,16-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACTGGAGGGTGCTCTG
R:
GCTCCCTCTTGTAGCTGATGC
Band lengths:
104-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]