RnoALTA0009633-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14321625-14323292:+
Coord C1 exon
chr3:14321625-14321734
Coord A exon
chr3:14323098-14323133
Coord C2 exon
chr3:14323134-14323292
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTGGGGGCTGGGAGAATTAGATT
3' ss Score
-8.64
Exon sequences
Seq C1 exon
CACAAACTCGACTGTCAGAACTACACCATGAAATAGAAGCAGCAGAACAGAAAGTATTACGGGCTACTCAAGAATTTAAACAACTGGAAGAAGCTATACGACAAAAAAAG
Seq A exon
ATTTCAGAAGCAGAGAAAGACCTTCTTCTCAAGCAG
Seq C2 exon
TTGAGTGGTAGACTACGACACCTAAACAAGTTACGCCAGGAAGCTCTGGATCTAGAAGCTCAGTTGGAAAAGCAAAGAAAAGAAATTGCTGAAAAGCATGAGGAGATCAACAGTGCGCAGCTGGCCACAGACCTCCTGGACTCCAAAGACCCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-16-22,16-21,16-20,16-19-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.446
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACAGAAAGTATTACGGGC
R:
GAGCTTCCTGGCGTAACTTGT
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]