HsaALTA1019908-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121115091-121118540:+
Coord C1 exon
chr9:121115091-121115200
Coord A exon
chr9:121118346-121118424
Coord C2 exon
chr9:121118425-121118540
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTGGGGTTTGGGGAGATTAGATT
3' ss Score
-6.49
Exon sequences
Seq C1 exon
CACAAACTCGACTATCAGAACTGCATGATGAAATAGAAAAGGCAGAACAACAAATTTTGAGAGCTACTGAAGAATTTAAACAACTGGAAGAAGCTATACAACTAAAAAAG
Seq A exon
ATTTCAGAAGCAGGGAAAGACCTTCTTTACAAGCAGTTGAGTGGTAGACTACAACTTGTAAATAAATTACGCCAGGAAG
Seq C2 exon
CTCTGGATCTAGAACTGCAGATGGAAAAGCAAAAGCAGGAAATTGCCGGAAAGCAGAAGGAGATTAAGGACCTGCAAATAGCCATAGATAGCCTGGATTCCAAAGACCCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-19-27,19-26,19-25-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF127952=MscS_porin=FE(31.6=100)
A:
NA
C2:
PF127952=MscS_porin=PD(52.6=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGACTATCAGAACTGCATGA
R:
CTCCTTCTGCTTTCCGGCAAT
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains