HsaALTA1019908-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121115091-121118540:+
Coord C1 exon
chr9:121115091-121115200
Coord A exon
chr9:121118421-121118424
Coord C2 exon
chr9:121118425-121118540
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTGTAAATAAATTACGCCAGGAA
3' ss Score
2.83
Exon sequences
Seq C1 exon
CACAAACTCGACTATCAGAACTGCATGATGAAATAGAAAAGGCAGAACAACAAATTTTGAGAGCTACTGAAGAATTTAAACAACTGGAAGAAGCTATACAACTAAAAAAG
Seq A exon
GAAG
Seq C2 exon
CTCTGGATCTAGAACTGCAGATGGAAAAGCAAAAGCAGGAAATTGCCGGAAAGCAGAAGGAGATTAAGGACCTGCAAATAGCCATAGATAGCCTGGATTCCAAAGACCCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-19-27,19-26,19-25-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF127952=MscS_porin=FE(31.6=100)
A:
NA
C2:
PF127952=MscS_porin=PD(52.6=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGGAAGAAGCTATACAACT
R:
CTCCTTCTGCTTTCCGGCAAT
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains