MmuALTA0003890-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35127928-35129815:+
Coord C1 exon
chr2:35127928-35128037
Coord A exon
chr2:35129621-35129685
Coord C2 exon
chr2:35129686-35129815
Length
65 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGGGGGCTGGGGAGAATTAGATT
3' ss Score
-8.87
Exon sequences
Seq C1 exon
CACAAACTCGACTGTCAGAACTACACCATGAAATAGAAACAGCAGAACAAAAAGTATTACGGGCTACTCAAGAATTTAAACAACTGGAAGAAGCTATACAACAAAAAAAG
Seq A exon
ATTTCAGAAGCAGAGAAAGACCTCCTTCTCAAGCAGTTGAGTGGTAGACTACAACATCTAAACAG
Seq C2 exon
ATTACGCCAGGAAGCTCTGGACCTAGAAATACAGATGGAAAAGCAAAGAAAAGAAATTGCCGAAAAGCATGAAGAGATCAATACCGTGCAGCTAGCCACAGACAGCCTGGATCCCAAAGACCCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-19-22,19-21,19-20,19-19-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=NA C2=0.524
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(22.5=100)
A:
NA
C2:
PF131661=AAA_13=PD(37.5=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAACAAAAAGTATTACGGGC
R:
GGCTAGCTGCACGGTATTGAT
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types