GgaALTA1008937-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8353040-8353571:+
Coord C1 exon
chr17:8353040-8353152
Coord A exon
NA
Coord C2 exon
chr17:8353386-8353571
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGC
5' ss Score
6.02
3' ss Seq
GCCATCTCCAGGTCTTACAGGCC
3' ss Score
1.94
Exon sequences
Seq C1 exon
CAGCACAAAGGAGATTAGAAGAGCTGCAAAATGCAATAGGAAAGGCAGAGCAACAAGTTTTGGAAGTAACAGGAGAACTGCAACAACTGGAGGGTGCTCTGGCTCAGAAAAAA
Seq A exon
NA
Seq C2 exon
GCCAACAGGGAGGATCTGGAGCAGCAGCTGAGTAAGAAGATACAAATACTGCATCAGCTACAAGAGGGAGCCTTAGCACTGGAGAAACAAATGGAGAAACAGAAAAGAGAAATAGGGAAAAAGCAGAAAGAGCTTGAAGACCTGAAGAGTTCTCTTGCTTCTGTAAACTCTAAAGAAGCAAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-16-17,16-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACTGGAGGGTGCTCTG
R:
GCTCCCTCTTGTAGCTGATGC
Band lengths:
104-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]