MmuEX0030515 @ mm9
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70119210-70125053:+
Coord C1 exon
chr2:70119210-70119289
Coord A exon
chr2:70124839-70124889
Coord C2 exon
chr2:70124976-70125053
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTAAATGTCTTTCAGAAG
3' ss Score
8.99
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GTAATTTGGCACAAACCAGAGCTAAGATCACAGCATCCTCGAGATCTTTGCCTCCACATTTCAGTGCTGGGAGGGCCAAG
Seq A exon
AAGTCTCCTCACAGTGTACCCAGTTATGTCCTAAACACTTCACCCCCTGAG
Seq C2 exon
GTAGACACCCTGGAGGTGATTCGACATCCAGAAGAAACCACCAACATGAAGAGACAAACCATGGCTTCTTACTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.353 C2=0.231
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(2.2=100)
C2:
PF0006316=Myosin_head=FE(3.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAGATCACAGCATCCTCGA
R:
CCGGAAGTAAGAAGCCATGGT
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: