MmuEX0030515 @ mm10
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70281153-70286996:+
Coord C1 exon
chr2:70281153-70281232
Coord A exon
chr2:70286782-70286832
Coord C2 exon
chr2:70286919-70286996
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTAAATGTCTTTCAGAAG
3' ss Score
8.99
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GTAATTTGGCACAAACCAGAGCTAAGATCACAGCATCCTCGAGATCTTTGCCTCCACATTTCAGTGCTGGGAGGGCCAAG
Seq A exon
AAGTCTCCTCACAGTGTACCCAGTTATGTCCTAAACACTTCACCCCCTGAG
Seq C2 exon
GTAGACACCCTGGAGGTGATTCGACATCCAGAAGAAACCACCAACATGAAGAGACAAACCATGGCTTCTTACTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.353 C2=0.231
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(2.2=100)
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
ENSMUST00000060208fB2612
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAGATCACAGCATCCTCGA
R:
CCGGAAGTAAGAAGCCATGGT
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types