MmuINT0130222 @ mm9
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26064650-26066979:-
Coord C1 exon
chr2:26066794-26066979
Coord A exon
chr2:26065314-26066793
Coord C2 exon
chr2:26064650-26065313
Length
1480 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCCTTTCATCACATGGCAGGAT
3' ss Score
5.7
Exon sequences
Seq C1 exon
GCCATTTGAGTGAGGACCCCAAGTTTCCAAAGGTTCCATGGCCCACTCCAGACCTCTGCCCAGCCTGCCATGAGGAAATTAAAGGCCTGGACAGCTGGAATGAGGGCCAGGTGCTTCTGTTCCTGAAACAGCACTATAGCAGGGACAACCTGGTGGACGCATACTCTGTGGACCAGGGCAGTCCTG
Seq A exon
GTGAGTGGGAAGCCCAGGGCAGAGAGCAAGAAGAAGGCAAAGGTCTTAACCCCTCAGGGAAGTCCTGGAGACACCATGACACTGGGAGTCTCCGTCCACCCCATATCCTGGGTCCCAGAACTGACCTTTCCAAGAGCCTGCATCACAGGCTGGACCTAAGACTCCAGAGCCCTCAGGGGCCCCAGGCACTTAAGGAGGCCAAGGCAGTTGTGCCCTTCCTTGGGGTTGGCTTCTCCAGTCTGGACATGAGCCTCTGCGTGGTGCTCTACGTGGCCTCCTCCTTGTTCCTGATGATCATGTACTTCTTCTTCAGAGTGAGGTCCAAGCGATGGAAAGTCCGGCTCTACCACCCAGCTGTGTAGAGACCCTGGGGCAGTCATGGCGATACAGAGGAAGCTTTGAACCACCCACACACCTGCAGCTTTAATGTTGGGATCAGGGATTTTGCAAATGTGCCCAGCATGGTGTCTGGAGGAGCATGTTTTCTTTTTTTTTTTCCTATGGAACATTTTTGCCTTGCTGTTACCTTGTCCTCACCTTCCCAGCCTCCATGTTAGACTAGTGTGTATTTGGCCCTATATGCTAGAAGGGGGCAGGTCCAACCCACAGCCACACAGCCTTCCATGAAGCCTCACATCTACATTTGTTACCTTCCCACCCACCCCCTCTCTCTGGGCACAGCATCCAGAGATGAGCAGCCAAAGCACAGAGGCCTCTACAGACAGCACACACCCTGCCACAGATGTGGGCTGTGTTCCTGCATAAGCCAAAAGTGCTTTCATGGGGGCTCAGGGTGCTCTGAACTTGAACAAGGAAGTCTGATCATCTTGTGGGGTACAGGGCCTAGAGGCCACTAAGTTATGTTGTAGCTTCCCTGCGTCTTAAATACCCAGGTCAAGCTGTAGTGCAGTCTTGGTCTCTGTGGGGCAGTGCAGTCTCCAGGAAGCCTCTAAAGACCCTGTCATGTCTGTCATGTACACTACAGAAGACACTGGTGGTGGCATGGGATGCTACCCCTGTGTACTTGGTCTCCTGGCCTTGAGGGTAACTTAAAAACAACAACATCAACTTAAATACATTATTTGTAAAATCTCAATGGTAAACTTGTGCCTAAAGACTTTTAACAAATGGACTAAGTCTACATTTCTGGAAACATTCTTACTGAGACCCTCCATAGCTCAGGAGCTTCCTTTTATTTGGATAAAGCAAGCTAGTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGAGAGCGCATGTGCGCATGTGTGTGCATGTGTGTACATTCCATTTTGCATATTCTATCTTTTATATTTGCATCCTTCCCAATGACAGTTGGTCACATGGGTACCATTTAAGACCCTGTATTATCGATGTCCCTGCTGCCACTTAAGAAAATGGACAGCTGTCTCCTTGGGCTGTTATTAACCCTCCTTTCATCACATGGCAG
Seq C2 exon
GATCAGTTCTGAGAGCCAGACCTTGGCTGGGGCAGATGGCCAGACTCAGCCACGTGAACCTCCTGCCTCACTTCCCTGTGGAGGAAGTTTCTTCTTTGAAACCTGGAGTCCTGTGCTTAAAAACAAACAAGCCCAGATCATCGTTAGGTGTTTCCAAGGATGAACACTCCTGGTCTGTCAGCTTGAGAATTGGGCCTATTTAAGGACAGCTCCAGTGAAATGTCTGAGCCCGAAGGGTGGCCCTGGGGCTGCCATAGCACCCCACAGTGCCTGGCGTGGCTGATGTTTGCAGAAGCCCACTCTGGGCAGATCCTACTTTCAGCTGCTCTTGTACAGTCCCAGGTCATCCCTTCTGGGGGACAAGCTTGCCACGGACATCCCTGTTTGAACTGTTCATTCTGCAGTGAAAAGGCTTGCATCCCTCCAGGGACCCATCTTTGGGCCAAGTGTAAGGTCTGTTTTAAAGTCTGAAGTTTTATGAGAGGTATTAAGATTAATATCTAGAATAGTTCAGTAATTTAAATGTTTATTTATTTTTTAATGCAAAGATTTTGAGTAAAAAGCAATTGGCATGAAAATGTCAATGAAATTTCTTAAGGGGTACATTTTGTATTTAAGTAAACTCTAATGTGCACATTGTAAGAATAAAGAAATTTGACATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327-Qsox2:NM_153559:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=PD(14.6=23.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGGTGGACGCATACTC
R:
CAGAGTGGGCTTCTGCAAACA
Band lengths:
345-1825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: