MmuINT0130222 @ mm10
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26209125-26211459:-
Coord C1 exon
chr2:26211274-26211459
Coord A exon
chr2:26209794-26211273
Coord C2 exon
chr2:26209125-26209793
Length
1480 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCCTTTCATCACATGGCAGGAT
3' ss Score
5.7
Exon sequences
Seq C1 exon
GCCATTTGAGTGAGGACCCCAAGTTTCCAAAGGTTCCATGGCCCACTCCAGACCTCTGCCCAGCCTGCCATGAGGAAATTAAAGGCCTGGACAGCTGGAATGAGGGCCAGGTGCTTCTGTTCCTGAAACAGCACTATAGCAGGGACAACCTGGTGGACGCATACTCTGTGGACCAGGGCAGTCCTG
Seq A exon
GTGAGTGGGAAGCCCAGGGCAGAGAGCAAGAAGAAGGCAAAGGTCTTAACCCCTCAGGGAAGTCCTGGAGACACCATGACACTGGGAGTCTCCGTCCACCCCATATCCTGGGTCCCAGAACTGACCTTTCCAAGAGCCTGCATCACAGGCTGGACCTAAGACTCCAGAGCCCTCAGGGGCCCCAGGCACTTAAGGAGGCCAAGGCAGTTGTGCCCTTCCTTGGGGTTGGCTTCTCCAGTCTGGACATGAGCCTCTGCGTGGTGCTCTACGTGGCCTCCTCCTTGTTCCTGATGATCATGTACTTCTTCTTCAGAGTGAGGTCCAAGCGATGGAAAGTCCGGCTCTACCACCCAGCTGTGTAGAGACCCTGGGGCAGTCATGGCGATACAGAGGAAGCTTTGAACCACCCACACACCTGCAGCTTTAATGTTGGGATCAGGGATTTTGCAAATGTGCCCAGCATGGTGTCTGGAGGAGCATGTTTTCTTTTTTTTTTTCCTATGGAACATTTTTGCCTTGCTGTTACCTTGTCCTCACCTTCCCAGCCTCCATGTTAGACTAGTGTGTATTTGGCCCTATATGCTAGAAGGGGGCAGGTCCAACCCACAGCCACACAGCCTTCCATGAAGCCTCACATCTACATTTGTTACCTTCCCACCCACCCCCTCTCTCTGGGCACAGCATCCAGAGATGAGCAGCCAAAGCACAGAGGCCTCTACAGACAGCACACACCCTGCCACAGATGTGGGCTGTGTTCCTGCATAAGCCAAAAGTGCTTTCATGGGGGCTCAGGGTGCTCTGAACTTGAACAAGGAAGTCTGATCATCTTGTGGGGTACAGGGCCTAGAGGCCACTAAGTTATGTTGTAGCTTCCCTGCGTCTTAAATACCCAGGTCAAGCTGTAGTGCAGTCTTGGTCTCTGTGGGGCAGTGCAGTCTCCAGGAAGCCTCTAAAGACCCTGTCATGTCTGTCATGTACACTACAGAAGACACTGGTGGTGGCATGGGATGCTACCCCTGTGTACTTGGTCTCCTGGCCTTGAGGGTAACTTAAAAACAACAACATCAACTTAAATACATTATTTGTAAAATCTCAATGGTAAACTTGTGCCTAAAGACTTTTAACAAATGGACTAAGTCTACATTTCTGGAAACATTCTTACTGAGACCCTCCATAGCTCAGGAGCTTCCTTTTATTTGGATAAAGCAAGCTAGTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGAGAGCGCATGTGCGCATGTGTGTGCATGTGTGTACATTCCATTTTGCATATTCTATCTTTTATATTTGCATCCTTCCCAATGACAGTTGGTCACATGGGTACCATTTAAGACCCTGTATTATCGATGTCCCTGCTGCCACTTAAGAAAATGGACAGCTGTCTCCTTGGGCTGTTATTAACCCTCCTTTCATCACATGGCAG
Seq C2 exon
GATCAGTTCTGAGAGCCAGACCTTGGCTGGGGCAGATGGCCAGACTCAGCCACGTGAACCTCCTGCCTCACTTCCCTGTGGAGGAAGTTTCTTCTTTGAAACCTGGAGTCCTGTGCTTAAAAACAAACAAGCCCAGATCATCGTTAGGTGTTTCCAAGGATGAACACTCCTGGTCTGTCAGCTTGAGAATTGGGCCTATTTAAGGACAGCTCCAGTGAAATGTCTGAGCCCGAAGGGTGGCCCTGGGGCTGCCATAGCACCCCACAGTGCCTGGCGTGGCTGATGTTTGCAGAAGCCCACTCTGGGCAGATCCTACTTTCAGCTGCTCTTGTACAGTCCCAGGTCATCCCTTCTGGGGGACAAGCTTGCCACGGACATCCCTGTTTGAACTGTTCATTCTGCAGTGAAAAGGCTTGCATCCCTCCAGGGACCCATCTTTGGGCCAAGTGTAAGGTCTGTTTTAAAGTCTGAAGTTTTATGAGAGGTATTAAGATTAATATCTAGAATAGTTCAGTAATTTAAATGTTTATTTATTTTTTAATGCAAAGATTTTGAGTAAAAAGCAATTGGCATGAAAATGTCAATGAAATTTCTTAAGGGGTACATTTTGTATTTAAGTAAACTCTAATGTGCACATTGTAAGAATAAAGAAATTTGACATTTAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327:ENSMUST00000036187:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=PD(14.6=23.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGGTGGACGCATACTC
R:
CAGAGTGGGCTTCTGCAAACA
Band lengths:
345-1825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types