MmuINT0071283 @ mm9
Intron Retention
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26808476-26809016:+
Coord C1 exon
chr2:26808476-26808555
Coord A exon
chr2:26808556-26808776
Coord C2 exon
chr2:26808777-26809016
Length
221 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTCGTTTCCTCCTTCCAGGAG
3' ss Score
11.43
Exon sequences
Seq C1 exon
AGGAGATCCTGCCAGAGATGGAGTCTGGAGGCATCAAAGACCTAGTCCAGGTGATCCGGGGGCGCTTTACCTCCAGCCTG
Seq A exon
GTAAGTGATGATGACACCTTGTATCGAGCCAGAACCCTTGCACTGCACTGACTCATAGCTCCACATGATGCCTTTCCCTGTGACTGGGCTGAATCCAATCCCAAATGGGAAGTGCAGCCAGACCACCTGAAAGATCCCATCAGTAGGATTTATGTCGTCAAAGTAATTGCTCCCGGATCTTGAGGCCACTGTAGCAAATGGTTCTCGTTTCCTCCTTCCAG
Seq C2 exon
GAGCTGATTTCTTACGCTGATGAGATACTCCAGGTACTGGAAGCAAATGCACAACCTGGCCTCCAGGAGGATCAGCTTGAGCCTCCTGCAGGGCAGGAAGCCCCACTGCAGGGAGAGCCCCTCTTCAGGCCCTGACATGCTGCCCTTCTGGTCCTGTGGTAAGAGAAAGTATCACTAGGTCCAGTATTAATTTCGTACCCCATGGTGACTAATAAAAGAAGCCCTAGGCTGTTTCTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-Gm711:NM_198628:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATGGAGTCTGGAGGCA
R:
TGCCAGAAACAGCCTAGGG
Band lengths:
308-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: