MmuEX0001717 @ mm9
Exon Skipping
Gene
ENSMUSG00000070883 | 4930578N16Rik
Description
RIKEN cDNA 4930578N16 gene [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69599779-69625443:-
Coord C1 exon
chr2:69625217-69625443
Coord A exon
chr2:69620002-69620175
Coord C2 exon
chr2:69599779-69599943
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTTATTCTGTCTCTTCACAGGGA
3' ss Score
11.1
5' ss Seq
CACGTACGA
5' ss Score
5.74
Exon sequences
Seq C1 exon
GAATGGATTGCTTTGAAAAAGAAGAGATTCCCTATCCACCCCTCCTACCTAGCAAGGTGGATCTCCAGCAGATCACCATAATCCCACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAGAAAGAGCAGCAAAGAAGAAAATGCATGTGAAATCCCAAGAGTTGGTAAAACACTGGACTAACACATATGCA
Seq A exon
GGAATGAAAGAACAGAAACTTAAAGCCAAGCAAAAGCGTGATGAAGAGATTGAGGCTGAAAGAAAAGTTCTTGATCTGGAGGAAGAAATATACAAAGAAGGAGAAAGAAAGAAGGCCATTGAGAGTGCTAGGCAGTGCCAGTTTCACCAGACGGAGCGAGTGAAGCGCTTTCAC
Seq C2 exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTCACATTCAGCAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883_MULTIEX1-2/6=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.171 A=0.293 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=PU(2.7=15.5)
C2:
PF138681=Trichoplein=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCTCCTACCTAGCAAG
R:
GCCTGCAATTGTTCCTTAGCC
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types