GgaEX0014517 @ galGal4
Exon Skipping
Gene
ENSGALG00000009824 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr7:18094592-18095913:+
Coord C1 exon
chr7:18094592-18094808
Coord A exon
chr7:18095453-18095626
Coord C2 exon
chr7:18095720-18095913
Length
174 bp
Sequences
Splice sites
3' ss Seq
AATTTTTATCTGCATTGTAGGGC
3' ss Score
7.64
5' ss Seq
CATGTTTGT
5' ss Score
-4.64
Exon sequences
Seq C1 exon
ATTTGAAGAAAATAACATTCTAGATGGATGTTTTCTTCCAAATGACGTAGATCTCCGTCAGGTAATTGTATTGCCAAGAGCAGAGTGGGAAAGGATGCAGGAGGGCCTCGGCAGCATGAGCAGAGAGGCAGCACGCGTCCTCGCTGAGAGGAAAGAGCGACAAGAAATGCACTTACGCTCCAAGGCGGCTGTCAGAGACTGGACGAACACCATTATG
Seq A exon
GGCCAGGCACAAAGGAAACTGAAAGCCAAAAAACTCCGTGAAGAAAAGCAAGAGGAAGAAAGAAAGTTACTTGATTTGGAAGAAGCAAAATTCCAAGCAGCAAAATGGAAGGAGGCCATCGATAAAGCAAAAACTTATCTGTACCACCAGAACGAAAGAGTGAAAGGGCTGCAT
Seq C2 exon
AGCGCACTTCTACTTGCTGAGGTCCTAAAGGAAAGGGATGCTCAAATTGAATTTAAAAAGTTAAAGTCAGATGTTAACAAAAAGAAGGAAGAAGAAATAGAACGTCGGTGTAAAGAAGCTCTTCTCAGAGAGGAAGAAAAGGTACATCAGCGTTATATGAATCGACTGGCACTAAGCAGAGATCAGCTGGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824_MULTIEX1-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.138 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=PU(2.7=15.5)
C2:
PF138681=Trichoplein=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGAGGAAAGAGCGACAA
R:
TCTCTGCTTAGTGCCAGTCGA
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]