RnoEX0017786 @ rn6
Exon Skipping
Gene
ENSRNOG00000052954 | Ccdc173
Description
coiled-coil domain containing 173 [Source:RGD Symbol;Acc:1308818]
Coordinates
chr3:56024090-56027999:-
Coord C1 exon
chr3:56027773-56027999
Coord A exon
chr3:56024399-56024572
Coord C2 exon
chr3:56024090-56024283
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTATTTTGTCTTTTCACAGGGA
3' ss Score
10.24
5' ss Seq
CATGTACTA
5' ss Score
-4.29
Exon sequences
Seq C1 exon
GAATGGAGAGCTATGAAAAAGAAGAGATTCCCTATCCACCTCTCCTACCTAGCACAGTAGATCTCCAGCAGGTCACCATCATTCCACATGCTGAGTGGGAAAGGATTCGGGATAGCCTCAACAAGTTGACAAGAGAAGCAGCGGTCCTTCGTGCAGAAAGAACAGCAAAGAAAAATATGCATATGAAATCCCAAGAATTGGTAAAACACTGGACTAACACATACGCA
Seq A exon
GGAATGAAAGAACAGAAACTTAGAGCCAAGCAGAAGCGTGATGAAGAGCTTGAGGCTGAAAGACAAATTCTTGATCTGGAGGAAGAAATATACAAACAAGGAGAAAGGAAGAAGGCCATCGAAAATGCAAAGCAGTATCAGTTTTACCAGACAGAGAGAGTGAAACGCTTTCAT
Seq C2 exon
TCAGGACTTCTTCTCAGTAGAGTTATGAAAGAGCGTGATGTCCAGATTCAGTACAAAAAGAACGCAGTAAAATCAGATGAAAAATGGGAGGAGCAAGTGAAACTCAACGATGCGAAAGCTCTTAAAGAAGACCAAGAGAAACTAGAAAAGCAGCGCAGAGAAAGAGTAGCTCTTGCCAAAGATCACCTGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052954-'3-5,'3-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.276 C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=PU(2.7=15.5)
C2:
PF138681=Trichoplein=FE(19.2=100)
Main Skipping Isoform:
ENSRNOT00000089637fB2519
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCTTCGTGCAGAAAGAA
R:
ACTCTTTCTCTGCGCTGCTTT
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]