DreEX0019462 @ danRer10
Exon Skipping
Gene
ENSDARG00000077928 | ccdc173
Description
coiled-coil domain containing 173 [Source:ZFIN;Acc:ZDB-GENE-081104-457]
Coordinates
chr9:48522190-48528468:+
Coord C1 exon
chr9:48522190-48522389
Coord A exon
chr9:48525231-48525404
Coord C2 exon
chr9:48528312-48528468
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATCTGACTTCATCTTTACAGGGA
3' ss Score
8.24
5' ss Seq
CATGTGTGT
5' ss Score
2.6
Exon sequences
Seq C1 exon
CTGTGAACTCGGAGATGGAGAAAACCGGGGCAAATCTTCGTCAAGTGGTGGTCTTGTCTAAATCTGAATGGCAGCGGCTGCAGGACAGTGTGAACGGTATAAATCACCATAACAGAAGTGTGATGGCGGCGGCTGAACAGCGGGAGGCGCTGCACAAGCGCTCTAAAGACATCGTCAAAAACTGGTCCAACACCATTGCC
Seq A exon
GGACAGCGACAAAAAAAGCTTGAGGCCAAGAAAATCCGTGAGGCGATCGAAGAAGAGGAGAGAAAACTAATTGACATAGAAGAAGCGAAATACCAGGCCCAAATGCGGAAGGAGGCCATCGAGAAGGCAAAAACCCAGATGTACTACCAGACCGACAGAGTGAAAGGCTTCCAT
Seq C2 exon
GATTGTGGATCATGAACTTGAGAAAGAGCAGGAGAGGCAGGAGGTCAAACGCGAGGCTGAAGAAATCGAGCGTCTCAGAAATCTTCATCTGTGGGAGCAGGCCATGAAGGAGCGCAAGAAACAGGGGGAGAAGAGAAGCATACTGAAGGCTCATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077928_MULTIEX1-2/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.138 C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
PF096515=Cas_APE2256=PU(32.6=53.4),PF138681=Trichoplein=PU(3.7=15.5)
C2:
PF138681=Trichoplein=FE(15.2=100),PF112363=DUF3037=PU(5.1=7.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCGGGGCAAATCTTCGT
R:
TTTCTTCAGCCTCGCGTTTGA
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]