GgaEX0014517 @ galGal3
Exon Skipping
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20058385-20059706:+
Coord C1 exon
chr7:20058385-20058601
Coord A exon
chr7:20059246-20059419
Coord C2 exon
chr7:20059513-20059706
Length
174 bp
Sequences
Splice sites
3' ss Seq
AATTTTTATCTGCATTGTAGGGC
3' ss Score
7.64
5' ss Seq
CATGTTTGT
5' ss Score
-4.64
Exon sequences
Seq C1 exon
ATTTGAAGAAAATAACATTCTAGATGGATGTTTTCTTCCAAATGACGTAGATCTCCGTCAGGTAATTGTATTGCCAAGAGCAGAGTGGGAAAGGATGCAGGAGGGCCTCGGCAGCATGAGCAGAGAGGCAGCACGCGTCCTCGCTGAGAGGAAAGAGCGACAAGAAATGCACTTACGCTCCAAGGCGGCTGTCAGAGACTGGACGAACACCATTATG
Seq A exon
GGCCAGGCACAAAGGAAACTGAAAGCCAAAAAACTCCGTGAAGAAAAGCAAGAGGAAGAAAGAAAGTTACTTGATTTGGAAGAAGCAAAATTCCAAGCAGCAAAATGGAAGGAGGCCATCGATAAAGCAAAAACTTATCTGTACCACCAGAACGAAAGAGTGAAAGGGCTGCAT
Seq C2 exon
AGCGCACTTCTACTTGCTGAGGTCCTAAAGGAAAGGGATGCTCAAATTGAATTTAAAAAGTTAAAGTCAGATGTTAACAAAAAGAAGGAAGAAGAAATAGAACGTCGGTGTAAAGAAGCTCTTCTCAGAGAGGAAGAAAAGGTACATCAGCGTTATATGAATCGACTGGCACTAAGCAGAGATCAGCTGGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824-'1-3,'1-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.138 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=PU(4.1=15.5)
C2:
PF138681=Trichoplein=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGAGGAAAGAGCGACAA
R:
TCTCTGCTTAGTGCCAGTCGA
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]