BtaEX6009193 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26667906-26671556:+
Coord C1 exon
chr2:26667906-26668132
Coord A exon
chr2:26671094-26671267
Coord C2 exon
chr2:26671363-26671556
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTTATCTTTTTGTAGGGG
3' ss Score
9.49
5' ss Seq
CATGTACTA
5' ss Score
-4.29
Exon sequences
Seq C1 exon
AAATGAAGAACTGTGAAGAAGATCCAGTTCTCTATCCACCTCTTCTGCCTACCAAAGTAGATCTCCGGCAGGTCACCATAATTCCACACAATGAGTGGGAAAGGATTCGAGATAGCCTAGACAGTTTGACAAGAGAAGCAGCATGCCTTCGTGCAGAAAGAAAAGCAAAGAAAGAAATGCATTTACGATCCCAAGAAGTGGTAAAACACTGGACTAATACATATGCA
Seq A exon
GGGATGAAAGAACAGAAACTTGAAGCCAAAAAGAAGCGTGATGAAGAAATAGAAGCAGAAAGACAAATTCTTGATATAGAAGAAGCAATATACAAACAAGGAGAAAGGAAAAAGGCCATTGAACTTGCAAAGCAATACCAATTTTACCAGACAGAACGAGTGAAAAACTTTCAT
Seq C2 exon
TCAGGACTACTTCTTAGTAGAGTTATGAAAGAACGGGATGCACAGATTGAATTCCAAAAGAGTAAAATAAAATCAGATAAAAAATGGGAGGAACAAGTGAAACTCAATGTTGAAAAAGCTTTTAAAGAAGAACGAGAAAAAGCAGAAAAACAACGCAGAGAAAGAGTGGCTCTTGCTAAAGATCATTTAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.144 C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=PU(2.6=15.5)
C2:
PF138681=Trichoplein=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCGTGCAGAAAGAAAAGC
R:
AGCCACTCTTTCTCTGCGTTG
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]