HsaEX6016602 @ hg19
Exon Skipping
Gene
ENSG00000154479 | C2orf77
Description
chromosome 2 open reading frame 77 [Source:HGNC Symbol;Acc:25064]
Coordinates
chr2:170531086-170550943:-
Coord C1 exon
chr2:170550771-170550943
Coord A exon
chr2:170531377-170531550
Coord C2 exon
chr2:170531086-170531279
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTGTCTTTTTACAGGGG
3' ss Score
10.61
5' ss Seq
CATGTACTA
5' ss Score
-4.29
Exon sequences
Seq C1 exon
ACTTCCGGCGGCGTTGCCAAGCAACCGCGTGGTACGAGTAACAACTCCACCGGCTGGCGTCCGCGGCGCTTGGCGCCACAGTCACTTTTCCAGATCTAGGAGCATCATGGACACCTCGTCAGAGATGCTGGTACGGTTTGGACGGCGCTGTGGACGGGCGAAGGAAAGTACAG
Seq A exon
GGGATGAAAGAACAGAAACTTGAAGCCAAAAAGAAGCGTGATGAAGAAATAGAGGCAGAAAGACAAATTCTTGATCTGGAAGAAGAAATATACAAACAAGGAAAAAGAAAAAAGGCCATTGAAAATGCAAAGCAATATCAATTTTACCAGACAGAAAGAGTGAAAAACTTTCAT
Seq C2 exon
TCGGGACTTCTTCTTAGTAGAGTTATGAAAGAACGTGATGCCCAGATTGAATTCCGAAAGAGTAAGATAAAATCAGATAAAAAATGGGAGGAACAGTTGAAACTCAACATTGAAAAAGCTTTTAAAGAAGAACAAGAAAAAGCAGAAAAACGACACAGAGAAAGGGTGGCTCTTGCCAAAGATCATCTAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479-'0-4,'0-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.177 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=PU(2.7=15.5)
C2:
PF138681=Trichoplein=FE(19.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATCATGGACACCTCGTC
R:
AGAGCCACCCTTTCTCTGTGT
Band lengths:
247-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)