Special

MmuEX0001718 @ mm9

Exon Skipping

Gene
ENSMUSG00000070883 | 4930578N16Rik
Description
RIKEN cDNA 4930578N16 gene [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69599779-69620175:-
Coord C1 exon
chr2:69620002-69620175
Coord A exon
chr2:69619696-69619889
Coord C2 exon
chr2:69599779-69599943
Length
194 bp
Sequences
Splice sites
3' ss Seq
ATAGTGTGATCTTTTTGTAGTCA
3' ss Score
4.44
5' ss Seq
ACAGTACGT
5' ss Score
7.54
Exon sequences
Seq C1 exon
GGAATGAAAGAACAGAAACTTAAAGCCAAGCAAAAGCGTGATGAAGAGATTGAGGCTGAAAGAAAAGTTCTTGATCTGGAGGAAGAAATATACAAAGAAGGAGAAAGAAAGAAGGCCATTGAGAGTGCTAGGCAGTGCCAGTTTCACCAGACGGAGCGAGTGAAGCGCTTTCAC
Seq A exon
TCAGGACTTCTTCTCAGCAGAGTTATGAAAGAGCGTGATGTCCAGATTCAGTACAAAAAGAATGCAGTGAAATCAGATAAAAAATGGGAGGAGCAAGTGAAGCTCAACGATGAAAAAGCTTTTAAAGAAGACCAAGAGAAAGAAGAAAAACGGCGCAGAGAAAGAGTAGCTCTTGCCGAGGATCATCTGAAACA
Seq C2 exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTCACATTCAGCAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883_MULTIEX1-3/6=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.293 A=0.426 C2=0.200
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF138681=Trichoplein=PU(2.7=15.5)

							
A:
PF138681=Trichoplein=FE(19.1=100)

							
C2:
PF138681=Trichoplein=FE(16.1=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000092548





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000092548f5420A, ENSMUSP00000092548f5421A
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr2:169674576-169674769 
HIGH PSI
HsaEX6016603
(CCDC173)
Human
(hg19)
chr2:170531086-170531279 
HIGH PSI
HsaEX6016603
(C2orf77)
Rat
(rn6)
chr3:56024090-56024283 
HIGH PSI
RnoEX6017320
(Ccdc173)
Cow
(bosTau6)
chr2:26671363-26671556 
HIGH PSI
BtaEX6009192
(CCDC173)
Chicken
(galGal4)
chr7:18095720-18095913 
HIGH PSI
GgaEX1013330
(CCDC173)
Chicken
(galGal3)
chr7:20059513-20059706 
HIGH PSI
GgaEX1013330
(C2orf77)
Zebrafish
(danRer10)
chr9:48525497-48525702 
HIGH PSI
DreEX0019463
(ccdc173)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AAGCCAAGCAAAAGCGTGATG

				
R: 
TCTCCTTTTCAAGCTCCTGGA

				
Band lengths: 
258-452

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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