MmuEX0001718 @ mm10
Exon Skipping
Gene
ENSMUSG00000070883 | Ccdc173
Description
coiled-coil domain containing 173 [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69761722-69782118:-
Coord C1 exon
chr2:69781945-69782118
Coord A exon
chr2:69781639-69781832
Coord C2 exon
chr2:69761722-69761886
Length
194 bp
Sequences
Splice sites
3' ss Seq
ATAGTGTGATCTTTTTGTAGTCA
3' ss Score
4.44
5' ss Seq
ACAGTACGT
5' ss Score
7.54
Exon sequences
Seq C1 exon
GGAATGAAAGAACAGAAACTTAAAGCCAAGCAAAAGCGTGATGAAGAGATTGAGGCTGAAAGAAAAGTTCTTGATCTGGAGGAAGAAATATACAAAGAAGGAGAAAGAAAGAAGGCCATTGAGAGTGCTAGGCAGTGCCAGTTTCACCAGACGGAGCGAGTGAAGCGCTTTCAC
Seq A exon
TCAGGACTTCTTCTCAGCAGAGTTATGAAAGAGCGTGATGTCCAGATTCAGTACAAAAAGAATGCAGTGAAATCAGATAAAAAATGGGAGGAGCAAGTGAAGCTCAACGATGAAAAAGCTTTTAAAGAAGACCAAGAGAAAGAAGAAAAACGGCGCAGAGAAAGAGTAGCTCTTGCCGAGGATCATCTGAAACA
Seq C2 exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTCACATTCAGCAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883_MULTIEX1-3/9=2-9
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.435 C2=0.209
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=PU(2.7=15.5)
A:
PF138681=Trichoplein=FE(19.1=100)
C2:
PF138681=Trichoplein=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAAGCAAAAGCGTGATG
R:
TCTCCTTTTCAAGCTCCTGGA
Band lengths:
258-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types