MmuEX0001714 @ mm10
Exon Skipping
Gene
ENSMUSG00000070883 | Ccdc173
Description
coiled-coil domain containing 173 [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69778060-69781832:-
Coord C1 exon
chr2:69781639-69781832
Coord A exon
chr2:69779080-69779224
Coord C2 exon
chr2:69778060-69778216
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATTCGTATCTTATTTTCAGCTC
3' ss Score
8.1
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TCAGGACTTCTTCTCAGCAGAGTTATGAAAGAGCGTGATGTCCAGATTCAGTACAAAAAGAATGCAGTGAAATCAGATAAAAAATGGGAGGAGCAAGTGAAGCTCAACGATGAAAAAGCTTTTAAAGAAGACCAAGAGAAAGAAGAAAAACGGCGCAGAGAAAGAGTAGCTCTTGCCGAGGATCATCTGAAACA
Seq A exon
CTCTCAGGTTTTGAGCAGACATCAGTCATCCACACCACCTCCTTCCTCCTGAGTCCTGGTCCTTTTCAACCCAATACGCTGGGCAGACTTTAACTAAATCAACTAAAGCTGACTACATCACGAGAATGTTTTGGTATTGGTGATG
Seq C2 exon
AATTGAGGAACACAAAGAGGAAGAAGAAGCAAGAAAGAAAAGTGAAGAAAAAGATGCTGAGGAGATGAAGCGGCAGAATTTGCTGTATGAAATCGAGATGAAGAAAAACCTAAGCAAGAAACAGGAAGAGATAGATACAAACAGGAAACTGCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883_MULTIEX1-4/9=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=1.000 C2=0.635
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(19.1=100)
A:
NO
C2:
PF138681=Trichoplein=FE(15.5=100)
Main Inclusion Isoform:
ENSMUST00000094942fB145
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAGCGTGATGTCCAGA
R:
CCGCTTCATCTCCTCAGCATC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types