MmuEX0001714 @ mm9
Exon Skipping
Gene
ENSMUSG00000070883 | 4930578N16Rik
Description
RIKEN cDNA 4930578N16 gene [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69616117-69619889:-
Coord C1 exon
chr2:69619696-69619889
Coord A exon
chr2:69617137-69617281
Coord C2 exon
chr2:69616117-69616273
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATTCGTATCTTATTTTCAGCTC
3' ss Score
8.1
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TCAGGACTTCTTCTCAGCAGAGTTATGAAAGAGCGTGATGTCCAGATTCAGTACAAAAAGAATGCAGTGAAATCAGATAAAAAATGGGAGGAGCAAGTGAAGCTCAACGATGAAAAAGCTTTTAAAGAAGACCAAGAGAAAGAAGAAAAACGGCGCAGAGAAAGAGTAGCTCTTGCCGAGGATCATCTGAAACA
Seq A exon
CTCTCAGGTTTTGAGCAGACATCAGTCATCCACACCACCTCCTTCCTCCTGAGTCCTGGTCCTTTTCAACCCAATACGCTGGGCAGACTTTAACTAAATCAACTAAAGCTGACTACATCACGAGAATGTTTTGGTATTGGTGATG
Seq C2 exon
AATTGAGGAACACAAAGAGGAAGAAGAAGCAAGAAAGAAAAGTGAAGAAAAAGATGCTGAGGAGATGAAGCGGCAGAATTTGCTGTATGAAATCGAGATGAAGAAAAACCTAAGCAAGAAACAGGAAGAGATAGATACAAACAGGAAACTGCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883-'3-5,'3-4,5-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=1.000 C2=0.538
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(19.1=100)
A:
NO
C2:
PF138681=Trichoplein=FE(15.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAGCGTGATGTCCAGA
R:
CCGCTTCATCTCCTCAGCATC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: