RnoEX6017320 @ rn6
Exon Skipping
Gene
ENSRNOG00000052954 | Ccdc173
Description
coiled-coil domain containing 173 [Source:RGD Symbol;Acc:1308818]
Coordinates
chr3:56017738-56024572:-
Coord C1 exon
chr3:56024399-56024572
Coord A exon
chr3:56024090-56024283
Coord C2 exon
chr3:56017738-56017894
Length
194 bp
Sequences
Splice sites
3' ss Seq
AGTGTGATTTTTTTTTGTAGTCA
3' ss Score
6.04
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGAATGAAAGAACAGAAACTTAGAGCCAAGCAGAAGCGTGATGAAGAGCTTGAGGCTGAAAGACAAATTCTTGATCTGGAGGAAGAAATATACAAACAAGGAGAAAGGAAGAAGGCCATCGAAAATGCAAAGCAGTATCAGTTTTACCAGACAGAGAGAGTGAAACGCTTTCAT
Seq A exon
TCAGGACTTCTTCTCAGTAGAGTTATGAAAGAGCGTGATGTCCAGATTCAGTACAAAAAGAACGCAGTAAAATCAGATGAAAAATGGGAGGAGCAAGTGAAACTCAACGATGCGAAAGCTCTTAAAGAAGACCAAGAGAAACTAGAAAAGCAGCGCAGAGAAAGAGTAGCTCTTGCCAAAGATCACCTGAAACA
Seq C2 exon
AATAAAGGAACATGAAGAGGAAGAAGAAACAAGGAAGAAAAGTGAAGAAAAAGATGCCGAGGAGATAAAGCGGCAGAATTTGCTGTATGAAATCGAGATGAAAAAAAAACTAAGCAGGAAGCAGGAAGAGATAGATGCAAGCAGGAAGCGGTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052954-'8-7,'8-5,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.323 C2=0.472
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=PU(2.7=15.5)
A:
PF138681=Trichoplein=FE(19.2=100)
C2:
PF138681=Trichoplein=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAACTTAGAGCCAAGCAGA
R:
TTCTGCCGCTTTATCTCCTCG
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]