GgaEX1013330 @ galGal3
Exon Skipping
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20059246-20060782:+
Coord C1 exon
chr7:20059246-20059419
Coord A exon
chr7:20059513-20059706
Coord C2 exon
chr7:20060626-20060782
Length
194 bp
Sequences
Splice sites
3' ss Seq
CTAAAATTGTTCTCTTGCAGAGC
3' ss Score
9.25
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGCCAGGCACAAAGGAAACTGAAAGCCAAAAAACTCCGTGAAGAAAAGCAAGAGGAAGAAAGAAAGTTACTTGATTTGGAAGAAGCAAAATTCCAAGCAGCAAAATGGAAGGAGGCCATCGATAAAGCAAAAACTTATCTGTACCACCAGAACGAAAGAGTGAAAGGGCTGCAT
Seq A exon
AGCGCACTTCTACTTGCTGAGGTCCTAAAGGAAAGGGATGCTCAAATTGAATTTAAAAAGTTAAAGTCAGATGTTAACAAAAAGAAGGAAGAAGAAATAGAACGTCGGTGTAAAGAAGCTCTTCTCAGAGAGGAAGAAAAGGTACATCAGCGTTATATGAATCGACTGGCACTAAGCAGAGATCAGCTGGAACA
Seq C2 exon
AATAAAGGAGCGCAAGCATCAAGCAGATCTTGCCAAGCTGGAAGACAAAAGAGAAGGAGAAGAAATACAGAGATTGAGCCAACTGTACCAATTAGAACTTCTGAGAAAGATGGAAAAGGAACAGGAGAAAAAAGTTGAACGCCAGAGGCTGTATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.031 C2=0.270
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=PU(4.1=15.5)
A:
PF138681=Trichoplein=FE(29.0=100)
C2:
PF138681=Trichoplein=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAAAATTCCAAGCAGCA
R:
GCCTCTGGCGTTCAACTTTTT
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]