BtaEX6009192 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26671094-26676252:+
Coord C1 exon
chr2:26671094-26671267
Coord A exon
chr2:26671363-26671556
Coord C2 exon
chr2:26676096-26676252
Length
194 bp
Sequences
Splice sites
3' ss Seq
ATTGCAATTTTTTTTTGTAGTCA
3' ss Score
5.71
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GGGATGAAAGAACAGAAACTTGAAGCCAAAAAGAAGCGTGATGAAGAAATAGAAGCAGAAAGACAAATTCTTGATATAGAAGAAGCAATATACAAACAAGGAGAAAGGAAAAAGGCCATTGAACTTGCAAAGCAATACCAATTTTACCAGACAGAACGAGTGAAAAACTTTCAT
Seq A exon
TCAGGACTACTTCTTAGTAGAGTTATGAAAGAACGGGATGCACAGATTGAATTCCAAAAGAGTAAAATAAAATCAGATAAAAAATGGGAGGAACAAGTGAAACTCAATGTTGAAAAAGCTTTTAAAGAAGAACGAGAAAAAGCAGAAAAACAACGCAGAGAAAGAGTGGCTCTTGCTAAAGATCATTTAAAACA
Seq C2 exon
AATAAAAGAACATGAAGAGGAAGAAGAAAGAAGGAGAAAAGAGGAAGAAAAGGATGCTGAGGAAATAAAGCGACAGAACTCATTATATGAAATAGAAATGAAAAAAAAACAAGGAAAGAAAAAAGAAGAGATCAATGAAAGCAGGAGACTATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=0.169 C2=0.632
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=PU(2.6=15.5)
A:
PF138681=Trichoplein=FE(18.8=100)
C2:
PF138681=Trichoplein=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAACAGAAACTTGAAGCCA
R:
TCTGTCGCTTTATTTCCTCAGCA
Band lengths:
247-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]