GgaEX1013330 @ galGal4
Exon Skipping
Gene
ENSGALG00000009824 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr7:18094592-18100030:+
Coord C1 exon
chr7:18094592-18094808
Coord A exon
chr7:18095720-18095913
Coord C2 exon
chr7:18099749-18100030
Length
194 bp
Sequences
Splice sites
3' ss Seq
CTAAAATTGTTCTCTTGCAGAGC
3' ss Score
9.25
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTGAAGAAAATAACATTCTAGATGGATGTTTTCTTCCAAATGACGTAGATCTCCGTCAGGTAATTGTATTGCCAAGAGCAGAGTGGGAAAGGATGCAGGAGGGCCTCGGCAGCATGAGCAGAGAGGCAGCACGCGTCCTCGCTGAGAGGAAAGAGCGACAAGAAATGCACTTACGCTCCAAGGCGGCTGTCAGAGACTGGACGAACACCATTATG
Seq A exon
AGCGCACTTCTACTTGCTGAGGTCCTAAAGGAAAGGGATGCTCAAATTGAATTTAAAAAGTTAAAGTCAGATGTTAACAAAAAGAAGGAAGAAGAAATAGAACGTCGGTGTAAAGAAGCTCTTCTCAGAGAGGAAGAAAAGGTACATCAGCGTTATATGAATCGACTGGCACTAAGCAGAGATCAGCTGGAACA
Seq C2 exon
GCAGAAAAGAAGGCAAAAGAACAGCAGGAGAAGCAAGCAGACTTGGACTACAATGCTCAGAAAGAGCTTATTGCGCTCCATAAAGAACATGAATTCCAGAAGTATGCAAAGCAAGTAATTGAATCGGTGTCCACAACTACACATCATCTCTATCCTCTCCTGAAAGCTTCCAAAGAAATAACAGGACTTGGAGGTGGCCCATTTTCCAGAGGAAGTGAAGGAACAAATCCTGGTTTTCAAGCACAGGATGTTGCTGAGACCCAATTACCTTGTTGTAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824_MULTIEX1-2/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.031 C2=0.436
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=FE(19.0=100)
C2:
PF138681=Trichoplein=PD(12.5=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCACTTACGCTCCAAGGC
R:
AAAATGGGCCACCTCCAAGTC
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]