DreEX0019463 @ danRer10
Exon Skipping
Gene
ENSDARG00000077928 | ccdc173
Description
coiled-coil domain containing 173 [Source:ZFIN;Acc:ZDB-GENE-081104-457]
Coordinates
chr9:48525231-48528468:+
Coord C1 exon
chr9:48525231-48525404
Coord A exon
chr9:48525497-48525702
Coord C2 exon
chr9:48528312-48528468
Length
206 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCATTGTTGAACAGGGT
3' ss Score
8.12
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GGACAGCGACAAAAAAAGCTTGAGGCCAAGAAAATCCGTGAGGCGATCGAAGAAGAGGAGAGAAAACTAATTGACATAGAAGAAGCGAAATACCAGGCCCAAATGCGGAAGGAGGCCATCGAGAAGGCAAAAACCCAGATGTACTACCAGACCGACAGAGTGAAAGGCTTCCAT
Seq A exon
GGTGCTCTGATGCTGGCGGAGGTTTTGAAGGAAAGGGAGGCTCAGATTGAGCTGAAACGCATGAAGCAGAACGCCACCAAAGACATAGACCGAGACATGTTGGCTGAAATGGCTTCCAGAGAAGAGCAGGCTCTCCTGGAGGAACAGAAGAAAGCCTTACAGAAGAAACAAGAACATCAGGCCATTGTTGAGAGCTTGAAACAACA
Seq C2 exon
GATTGTGGATCATGAACTTGAGAAAGAGCAGGAGAGGCAGGAGGTCAAACGCGAGGCTGAAGAAATCGAGCGTCTCAGAAATCTTCATCTGTGGGAGCAGGCCATGAAGGAGCGCAAGAAACAGGGGGAGAAGAGAAGCATACTGAAGGCTCATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077928_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.464 C2=0.660
Domain overlap (PFAM):
C1:
PF096515=Cas_APE2256=PU(32.6=53.4),PF138681=Trichoplein=PU(3.7=15.5)
A:
PF096515=Cas_APE2256=PD(65.3=89.9),PF138681=Trichoplein=FE(28.1=100)
C2:
PF138681=Trichoplein=FE(15.2=100),PF112363=DUF3037=PU(5.1=7.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCCAAGAAAATCCGTGA
R:
TGCTTCTCTTCTCCCCCTGTT
Band lengths:
294-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]