MmuEX0001720 @ mm10
Exon Skipping
Gene
ENSMUSG00000070883 | Ccdc173
Description
coiled-coil domain containing 173 [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69761722-69778216:-
Coord C1 exon
chr2:69778060-69778216
Coord A exon
chr2:69776130-69776269
Coord C2 exon
chr2:69761722-69761886
Length
140 bp
Sequences
Splice sites
3' ss Seq
TACCTACTTATTTTCTTAAGGAC
3' ss Score
6.37
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
AATTGAGGAACACAAAGAGGAAGAAGAAGCAAGAAAGAAAAGTGAAGAAAAAGATGCTGAGGAGATGAAGCGGCAGAATTTGCTGTATGAAATCGAGATGAAGAAAAACCTAAGCAAGAAACAGGAAGAGATAGATACAAACAGGAAACTGCTTCTT
Seq A exon
GACAATATGCACAATAAAAACATCATCCGAGCTGTAGAACAACAGCAGCAAGAGGAGGAAGACGAAAAGATTAGAAAGTTTATCAAAGCCAAAAAACGTCTTATACAAATGAGGATGGACAAAGATGCTGAAACACATAG
Seq C2 exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTCACATTCAGCAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883_MULTIEX1-6/9=5-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=0.606 C2=0.209
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(15.5=100)
A:
PF138681=Trichoplein=FE(13.7=100)
C2:
PF138681=Trichoplein=FE(16.1=100)
Main Skipping Isoform:
ENSMUST00000094942fB146
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGAAGCGGCAGAATTTG
R:
TGCTGAATGTGAGCATCCTGA
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types