GgaEX0014520 @ galGal4
Exon Skipping
Gene
ENSGALG00000009824 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr7:18096833-18100030:+
Coord C1 exon
chr7:18096833-18096989
Coord A exon
chr7:18097519-18097658
Coord C2 exon
chr7:18099749-18100030
Length
140 bp
Sequences
Splice sites
3' ss Seq
GGATCATTTTGCCCATACAGGAA
3' ss Score
7.35
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
AATAAAGGAGCGCAAGCATCAAGCAGATCTTGCCAAGCTGGAAGACAAAAGAGAAGGAGAAGAAATACAGAGATTGAGCCAACTGTACCAATTAGAACTTCTGAGAAAGATGGAAAAGGAACAGGAGAAAAAAGTTGAACGCCAGAGGCTGTATCAT
Seq A exon
GAACACGTAGCTAACCAGAAAATAATCAAAGCAGTGGAGAAACAAAAGCAAATGGAAGAAGACAATCGGATTAGAGCTCAGTTTAAAGCAAAGCAAACTATTGCCAAGCTGATGAAAGAGAAAGAAGCTGAATTGCGTAG
Seq C2 exon
GCAGAAAAGAAGGCAAAAGAACAGCAGGAGAAGCAAGCAGACTTGGACTACAATGCTCAGAAAGAGCTTATTGCGCTCCATAAAGAACATGAATTCCAGAAGTATGCAAAGCAAGTAATTGAATCGGTGTCCACAACTACACATCATCTCTATCCTCTCCTGAAAGCTTCCAAAGAAATAACAGGACTTGGAGGTGGCCCATTTTCCAGAGGAAGTGAAGGAACAAATCCTGGTTTTCAAGCACAGGATGTTGCTGAGACCCAATTACCTTGTTGTAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824_MULTIEX1-4/6=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=0.447 C2=0.436
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(15.5=100)
A:
PF138681=Trichoplein=FE(13.7=100)
C2:
PF138681=Trichoplein=PD(12.5=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTTGAACGCCAGAGGC
R:
TTCCTCTGGAAAATGGGCCAC
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]