DreEX6038499 @ danRer10
Exon Skipping
Gene
ENSDARG00000077928 | ccdc173
Description
coiled-coil domain containing 173 [Source:ZFIN;Acc:ZDB-GENE-081104-457]
Coordinates
chr9:48528312-48530585:+
Coord C1 exon
chr9:48528312-48528468
Coord A exon
chr9:48528556-48528695
Coord C2 exon
chr9:48530393-48530585
Length
140 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTGTTTCCTATCAGGAT
3' ss Score
10.82
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GATTGTGGATCATGAACTTGAGAAAGAGCAGGAGAGGCAGGAGGTCAAACGCGAGGCTGAAGAAATCGAGCGTCTCAGAAATCTTCATCTGTGGGAGCAGGCCATGAAGGAGCGCAAGAAACAGGGGGAGAAGAGAAGCATACTGAAGGCTCATAGA
Seq A exon
GATCTTTTAACCAACAGAGAGATGATGAAAGCAACAGAAGCGCAGAAACTGCAGGAAGAGGAGGAGAAATGCAAGCAGCTCGCCAGCCATAAAGAAAAAATGATGAAAATGAGGAAAGAAAAACAGGAGGAGATTTTCAG
Seq C2 exon
AGAGCTCCAGAGACACAGAGAGACGATAATCCAGAAGTTAGCAGTACAGAAGCAGCAGCTGATCAGCAATGAGGAGGAGATCATCGCCAAAGCAGTGTCTGAACGGGAGGAAAGACTGACCAGAGAACAACAGGAGAAAGAAAAGAAACACACAGACATGCTCAATGCCATTGCTGCACACAGAGAATCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077928-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=0.989 C2=0.638
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(15.2=100),PF112363=DUF3037=PU(5.1=7.5)
A:
PF138681=Trichoplein=FE(13.5=100),PF112363=DUF3037=FE(59.0=100)
C2:
PF138681=Trichoplein=FE(18.7=100),PF112363=DUF3037=PD(33.3=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAAGAGCAGGAGAGGCA
R:
TCCCGTTCAGACACTGCTTTG
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]