RnoEX6017321 @ rn6
Exon Skipping
Gene
ENSRNOG00000052954 | Ccdc173
Description
coiled-coil domain containing 173 [Source:RGD Symbol;Acc:1308818]
Coordinates
chr3:56012155-56017894:-
Coord C1 exon
chr3:56017738-56017894
Coord A exon
chr3:56015762-56015901
Coord C2 exon
chr3:56012155-56012347
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACATTACTTATTTCTTTAAGGAT
3' ss Score
7.51
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AATAAAGGAACATGAAGAGGAAGAAGAAACAAGGAAGAAAAGTGAAGAAAAAGATGCCGAGGAGATAAAGCGGCAGAATTTGCTGTATGAAATCGAGATGAAAAAAAAACTAAGCAGGAAGCAGGAAGAGATAGATGCAAGCAGGAAGCGGTTTTTT
Seq A exon
GATAATATGCGTGATAAAAACATCATCCGAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGAGGAAAAGACTAGAAAGTTTATCAAAGCCAAAAAACGTCTTATACAAATGAGGAAAGACAAAGAAGCTGAAACACACAG
Seq C2 exon
GCTAATGGAAGAACGGAGAGAAAGAATAAATAATTTCCTAAGTAAACTAATAAAAGAGAAACTTGATACTGAAGATTTGATTATGTCTAGAGATATTGCTGACATTGACACTGAGCTGGACAAAAGAGAAAAAGAAAAACATGAAAAAATGCAAGCAGACTTGAAAGCAATTGCAGAACATAGAGCCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052954-'13-11,'13-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=0.660 C2=0.523
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(15.6=100)
A:
PF138681=Trichoplein=FE(13.8=100)
C2:
PF138681=Trichoplein=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGAAAAAGATGCCGAGGA
R:
TCTTTTGTCCAGCTCAGTGTCA
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]