BtaEX6009190 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26676096-26682600:+
Coord C1 exon
chr2:26676096-26676252
Coord A exon
chr2:26679871-26680010
Coord C2 exon
chr2:26682408-26682600
Length
140 bp
Sequences
Splice sites
3' ss Seq
AATTTCCCCCCTACACCCAGGAA
3' ss Score
6.25
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AATAAAAGAACATGAAGAGGAAGAAGAAAGAAGGAGAAAAGAGGAAGAAAAGGATGCTGAGGAAATAAAGCGACAGAACTCATTATATGAAATAGAAATGAAAAAAAAACAAGGAAAGAAAAAAGAAGAGATCAATGAAAGCAGGAGACTATTTTTT
Seq A exon
GAACATTTGAATGATAAACATATCATCAAAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGATGAAAAGATTAGAAAATTTATCAAAGCAAAAAAGCGTCTAACACAAATGGGGAAAGAGAAAGAAGCTGAAACACACAG
Seq C2 exon
GCTAATGGAGGAACGGAGAAAAAGGATAAATAACTTCCTGAGTAAGCTAATGAAAGAGAAATTTGACAATGAAGATTTGATTATTGCTAGAGATATTGCAGAAGCTGAGGCTGAGTGGGAAAAAAGAGAAAGAGAAAAGTATGAAAAAAACAAAGCAGAATTAAAAGCAATCGCAGAACATAGAGCTCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.596 C2=0.262
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(15.3=100)
A:
PF138681=Trichoplein=FE(13.5=100)
C2:
PF138681=Trichoplein=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGAAAAGGATGCTGAGG
R:
TTTTTCCCACTCAGCCTCAGC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]