HsaEX6016605 @ hg38
Exon Skipping
Gene
ENSG00000154479 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:169650329-169662436:-
Coord C1 exon
chr2:169662280-169662436
Coord A exon
chr2:169654075-169654214
Coord C2 exon
chr2:169650329-169650521
Length
140 bp
Sequences
Splice sites
3' ss Seq
TATACAATTTTTCCCCCAAGGAA
3' ss Score
7.26
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AATAAAGGAACATGAGGAAGAAGAGGAAAGAAGGAAAAAATATGAAGAAAAAGATGCTGAGGAAATAAAGCGACAGAATGCATTATATGAAATTGAAATGAGAAAAAAACTAGAAAAGAAAAGAGAAGAGATGCATGAAAGCAGGAGACGGTTTCTT
Seq A exon
GAACATATGCAGGATAAACATATTATCAAAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGATGAAAAGATGAGAAAATTCATCAAAGCAAAAAAGCGTCTTATACAAATGGGGAAAGAAAAAGAGGCTGAAACACACAG
Seq C2 exon
GCTTATGGAGAAACGAAGAGAAAGAATACATAACTTCCTGAGTGAACTGTTGAAAGAGAAACTTGACAATGAAGATATGATTATTGCTAGAGATATTGCAGAAGCTGAGGCTGAATGGGAAAAAAGAGAAAGAGAAAAAGATGAAAAAAACAAAGCAGAATTAAAAACAATTGCAGAATATCGAGCCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479-'15-22,'15-21,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.787 C2=0.323
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(15.5=100)
A:
PF138681=Trichoplein=FE(13.7=100)
C2:
PF138681=Trichoplein=FE(19.0=100)
Main Skipping Isoform:
ENST00000447353fB11518
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGAAGAGGAAAGAAGGA
R:
GCCTCAGCTTCTGCAATATCTCT
Band lengths:
256-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains