GgaEX0014520 @ galGal3
Exon Skipping
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20060626-20063109:+
Coord C1 exon
chr7:20060626-20060782
Coord A exon
chr7:20061312-20061451
Coord C2 exon
chr7:20063061-20063109
Length
140 bp
Sequences
Splice sites
3' ss Seq
GGATCATTTTGCCCATACAGGAA
3' ss Score
7.35
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
AATAAAGGAGCGCAAGCATCAAGCAGATCTTGCCAAGCTGGAAGACAAAAGAGAAGGAGAAGAAATACAGAGATTGAGCCAACTGTACCAATTAGAACTTCTGAGAAAGATGGAAAAGGAACAGGAGAAAAAAGTTGAACGCCAGAGGCTGTATCAT
Seq A exon
GAACACGTAGCTAACCAGAAAATAATCAAAGCAGTGGAGAAACAAAAGCAAATGGAAGAAGACAATCGGATTAGAGCTCAGTTTAAAGCAAAGCAAACTATTGCCAAGCTGATGAAAGAGAAAGAAGCTGAATTGCGTAG
Seq C2 exon
ACAACGTGATGCAAGCATAGAAGTACAGAAAATTCAGATCCAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.447 C2=0.724
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(23.5=100)
A:
PF138681=Trichoplein=FE(20.8=100)
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTGCCAAGCTGGAAGAC
R:
TGCTGGATCTGAATTTTCTGTACT
Band lengths:
178-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]