GgaEX0014521 @ galGal3
Exon Skipping
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20061312-20063109:+
Coord C1 exon
chr7:20061312-20061451
Coord A exon
chr7:20062286-20062478
Coord C2 exon
chr7:20063061-20063109
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATACTCACGTTCTTCTGCAGAAT
3' ss Score
8.52
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAACACGTAGCTAACCAGAAAATAATCAAAGCAGTGGAGAAACAAAAGCAAATGGAAGAAGACAATCGGATTAGAGCTCAGTTTAAAGCAAAGCAAACTATTGCCAAGCTGATGAAAGAGAAAGAAGCTGAATTGCGTAG
Seq A exon
AATAACACAGGAACACCGGGATAAAATTGTTAGGCAATTAGCTGCCCAAATGAGTGAAGTACTGAAGATGGAAGACAAGCGTATTGCTAGAGAAATTGCAAAAAAAGAAGCTGCACAAGAAAAAGAACAGAAAGAGAAAGAAGCAAAAAAAAAGGCTGTCATTGAGTCTATTGCTGAACACAGAGCCACTGTG
Seq C2 exon
ACAACGTGATGCAAGCATAGAAGTACAGAAAATTCAGATCCAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.459 C2=0.724
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(20.8=100)
A:
PF138681=Trichoplein=FE(21.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACGTAGCTAACCAGAAAAT
R:
TTGCTGGATCTGAATTTTCTGTACT
Band lengths:
186-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]