BtaEX0007473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26679871-26683430:+
Coord C1 exon
chr2:26679871-26680010
Coord A exon
chr2:26682408-26682600
Coord C2 exon
chr2:26683266-26683430
Length
193 bp
Sequences
Splice sites
3' ss Seq
AAATGGTTATTTTGTTACAGGCT
3' ss Score
5.73
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GAACATTTGAATGATAAACATATCATCAAAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGATGAAAAGATTAGAAAATTTATCAAAGCAAAAAAGCGTCTAACACAAATGGGGAAAGAGAAAGAAGCTGAAACACACAG
Seq A exon
GCTAATGGAGGAACGGAGAAAAAGGATAAATAACTTCCTGAGTAAGCTAATGAAAGAGAAATTTGACAATGAAGATTTGATTATTGCTAGAGATATTGCAGAAGCTGAGGCTGAGTGGGAAAAAAGAGAAAGAGAAAAGTATGAAAAAAACAAAGCAGAATTAAAAGCAATCGCAGAACATAGAGCTCTTGTG
Seq C2 exon
ATGAAGAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAAGCTACAGAACAAATGCTAGCTATCTTAAAAGCAGACCAGATTTTCTGGGAGCATGAAAAGGAAAAAAAGCAGAAAGCTGATAAAGAACGTCGAGAAGTTCAAGATGCCCATATTCAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.262 C2=0.545
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(13.5=100)
A:
PF138681=Trichoplein=FE(18.8=100)
C2:
PF138681=Trichoplein=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGCAAGAGGAAGAA
R:
GGCATCTTGAACTTCTCGACGT
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development