GgaEX0014522 @ galGal3
Exon Skipping
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20062296-20063651:+
Coord C1 exon
chr7:20062296-20062478
Coord A exon
chr7:20062945-20063109
Coord C2 exon
chr7:20063542-20063651
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTCTATTTTATAAAATGCAGATG
3' ss Score
5.85
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GAACACCGGGATAAAATTGTTAGGCAATTAGCTGCCCAAATGAGTGAAGTACTGAAGATGGAAGACAAGCGTATTGCTAGAGAAATTGCAAAAAAAGAAGCTGCACAAGAAAAAGAACAGAAAGAGAAAGAAGCAAAAAAAAAGGCTGTCATTGAGTCTATTGCTGAACACAGAGCCACTGTG
Seq A exon
ATGAAGATGAAATTGGAGAAGGAGAGAGAGGAAAAAGCAGAAAGTAAAAAAGAACTTCAAGCATTGCTGGAAAAGAACCAGATCTATCTGGAATCAGAAAAAGCCAAGAAACAAAGACAACGTGATGCAAGCATAGAAGTACAGAAAATTCAGATCCAGCAAATG
Seq C2 exon
GCAGAAAAGAAGGCAAAAGAACAGCAGGAGAAGCAAGCAGACTTGGACTACAATGCTCAGAAAGAGCTTATTGCGCTCCATAAAGAACATGAATTCCAGAAGTATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824-'8-11,'8-10,9-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.475 A=0.724 C2=0.811
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCCAAATGAGTGAAGT
R:
TCATGTTCTTTATGGAGCGCA
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event