GgaINT0048323 @ galGal3
Intron Retention
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20062296-20063109:+
Coord C1 exon
chr7:20062296-20062478
Coord A exon
chr7:20062479-20062935
Coord C2 exon
chr7:20062936-20063109
Length
457 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
GTTAATCCCCTCTATTTTATAAA
3' ss Score
-0.69
Exon sequences
Seq C1 exon
GAACACCGGGATAAAATTGTTAGGCAATTAGCTGCCCAAATGAGTGAAGTACTGAAGATGGAAGACAAGCGTATTGCTAGAGAAATTGCAAAAAAAGAAGCTGCACAAGAAAAAGAACAGAAAGAGAAAGAAGCAAAAAAAAAGGCTGTCATTGAGTCTATTGCTGAACACAGAGCCACTGTG
Seq A exon
GTAAGAAATCTAACCTGTTCTCATCCCTCTTTCTGGCATGTACTTAGGAATACCTTCTAGGAACACTGTGGTTTTTAGCGTGCTAACTGTTAGTGAGACATACCCACAAGTTCTCAGTAGCTGCCTCTCATATTTATGATTTACAGTTACACATCTAACACCTTAAGCAAGCCACAAGGTACCTGGGTTCATCTGTTTGAGTTTGAAAGCTCTGTAATTGTTAGTAATTTGTGCAAACACTTCTCAGTCTCAGCCCTGCTTCCTGCAGCCGAGGAGCATGTCAGTGCTGCCAGAAACTGGGCCTGGACAGAGTGCAGCTGCTATGATCCAGCACATCAGAGCACTGGTGTGGGACTGCACTCTTATTGCTTCTGGATCTGGCCTGAGAATGGCTGGTTGAAAGGCATGGCTCCTCAAACTAGCAGGGTAACTATTTGGTTAATCCCCTCTATTTTAT
Seq C2 exon
AAAATGCAGATGAAGATGAAATTGGAGAAGGAGAGAGAGGAAAAAGCAGAAAGTAAAAAAGAACTTCAAGCATTGCTGGAAAAGAACCAGATCTATCTGGAATCAGAAAAAGCCAAGAAACAAAGACAACGTGATGCAAGCATAGAAGTACAGAAAATTCAGATCCAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824:ENSGALT00000015986:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGGGATAAAATTGTTAGGCA
R:
TGCTGGATCTGAATTTTCTGTACT
Band lengths:
351-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]