BtaINT0033021 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26682408-26683430:+
Coord C1 exon
chr2:26682408-26682600
Coord A exon
chr2:26682601-26683265
Coord C2 exon
chr2:26683266-26683430
Length
665 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TTTTGCCTTCTATCATCTAGATG
3' ss Score
9.11
Exon sequences
Seq C1 exon
GCTAATGGAGGAACGGAGAAAAAGGATAAATAACTTCCTGAGTAAGCTAATGAAAGAGAAATTTGACAATGAAGATTTGATTATTGCTAGAGATATTGCAGAAGCTGAGGCTGAGTGGGAAAAAAGAGAAAGAGAAAAGTATGAAAAAAACAAAGCAGAATTAAAAGCAATCGCAGAACATAGAGCTCTTGTG
Seq A exon
GTAAGCAATTCACTAATGACAAGTAAAAATCAAACAAAATTGAGCCCTTTGCTGTACTTTTCCCTAACTTACTCCCTCTGCTTCTCTAACAAAAAACTAAGAGATTTGAAAAACAATATATAAAATTACCTTCCAATATTCTTGAAATCAGACCGTTTACTTTCTAACAGAAAATGACATGATAATTACAAATAAGATCTTTATAGATGCAAAGTAATAGTCTCTTCTGTTTCAGAACCGTCTGAAATGTAAAAAAGTTATTAACTTTCATTTGAATGGTTTTAAGATAAACCAAGTAAAAATTACCCCATTGTGTTTCTGTGTATCTTAATACTTCAGAATTTACCCCTTACATGACTGACTTTCATAAGATTTAGATAGTTTTTAAGCATTATAGTAGTTATATAATGCTATAAATGTTTCCCTATTTTGAGATGGTCTTGCTTTTCTGTTCCTATATTTTTTTAAACCAATATCATTCTACTTATGTTTTCATTGTTTCTTGATATTACTAGAACAAAAAGTAAACTGGCCATGTGTGAGTCACCCCAATTTTTGGCTCTTTCATTGCGCCTGGCTGACTTTGCCCTTGGAACTTTCTAACTTCAAGGCCGTTGATTGCTAAAAATGGTTTTTTTTTTTTCCTTTTGCCTTCTATCATCTAG
Seq C2 exon
ATGAAGAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAAGCTACAGAACAAATGCTAGCTATCTTAAAAGCAGACCAGATTTTCTGGGAGCATGAAAAGGAAAAAAAGCAGAAAGCTGATAAAGAACGTCGAGAAGTTCAAGATGCCCATATTCAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090:ENSBTAT00000046952:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(18.8=100)
A:
NA
C2:
PF138681=Trichoplein=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATGGAGGAACGGAGAAA
R:
GGCATCTTGAACTTCTCGACGT
Band lengths:
343-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]