DreEX6038498 @ danRer10
Exon Skipping
Gene
ENSDARG00000077928 | ccdc173
Description
coiled-coil domain containing 173 [Source:ZFIN;Acc:ZDB-GENE-081104-457]
Coordinates
chr9:48521745-48533625:+
Coord C1 exon
chr9:48521745-48530585
Coord A exon
chr9:48531533-48531697
Coord C2 exon
chr9:48533200-48533625
Length
165 bp
Sequences
Splice sites
3' ss Seq
TATTTTAATTTTTATATTAGAGG
3' ss Score
4.28
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTGCGGATGGAAAGCATCCGCTGCATAGAACATATGCTGGAATAGTTGGCGGTTCATTCCGCTGTGGCGATCCCTGATAAATATTGGTTGGTAAACCTTTCATGAAACATTTTTGAATAATAACACAAATCACATCACGTTATTTCCAAAAATTATGCTTTAATGTGCACTCTCATAAATGAAGGTACAATATCTGCCACTGGGATGCATTTTTGTACCTAACAGCTACAGATTTTTACTTTTTAGATACTAAGTGTGATGCGTGGAAATCCTAGATTGGACTTTGTGTCTTTATCTTTGCTTTAGAGAGCTCCAGAGACACAGAGAGACGATAATCCAGAAGTTAGCAGTACAGAAGCAGCAGCTGATCAGCAATGAGGAGGAGATCATCGCCAAAGCAGTGTCTGAACGGGAGGAAAGACTGACCAGAGAACAACAGGAGAAAGAAAAGAAACACACAGACATGCTCAATGCCATTGCTGCACACAGAGAATCCATG
Seq A exon
AGGCAAGAGCAGGAAAGAAAGGTGGAGGAAGAGAAACAGAAAGCTCTGGAGATGCTGAATGCAAAGAAGGAAGCGGATCAAATCTTCATGGAAAAACAACAACGTCGAGCTCAAAAAGCAAGAGAAGAAGGAAAAACACTGCAGGATCTCTACATACAAGAGATG
Seq C2 exon
GCAGAGAAACGTGCAAAACATCAACGTACAAAGAAGGATCAGCAGGAGTTTGTGGAGAAGAGCAACGCTTTCATCATTGAGGAGGAAAAGCAGTTTCAGACATACGCCAAACAAGTCATCGAAACAGCCGAAAGGGCCGGCAGGAACACATACCCACTCATAAAGGCAGCCAGAGAGGGCATCGGTGGGGGTCTGGGGCCAGTTTTCGGTGGACTTAGACCGAGTTATCTGGTCCATGATGAGTCAGGCGTTCAGATGCCCAGTTATTTGAACAGCCGAACGCAAAACATAAAAGAGCTCAATGAAACCTCCGACATTCAGCAGTCCAAGAAAAGACTAGGATTCACCTGGTGATGCTTTATGATGTCTGCCTGTTATAATGATCCTGTCTTTGAATTGCTGAAATAAAGATTGTGTGCAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077928-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=0.964 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
PF138681=Trichoplein=FE(15.8=100)
C2:
PF138681=Trichoplein=PD(12.9=37.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGATCATCGCCAAAGC
R:
CCCTTTCGGCTGTTTCGATGA
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]