GgaEX0014522 @ galGal4
Exon Skipping
Gene
ENSGALG00000009824 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr7:18098493-18100030:+
Coord C1 exon
chr7:18098493-18098685
Coord A exon
chr7:18099152-18099316
Coord C2 exon
chr7:18099749-18100030
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTCTATTTTATAAAATGCAGATG
3' ss Score
5.85
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
AATAACACAGGAACACCGGGATAAAATTGTTAGGCAATTAGCTGCCCAAATGAGTGAAGTACTGAAGATGGAAGACAAGCGTATTGCTAGAGAAATTGCAAAAAAAGAAGCTGCACAAGAAAAAGAACAGAAAGAGAAAGAAGCAAAAAAAAAGGCTGTCATTGAGTCTATTGCTGAACACAGAGCCACTGTG
Seq A exon
ATGAAGATGAAATTGGAGAAGGAGAGAGAGGAAAAAGCAGAAAGTAAAAAAGAACTTCAAGCATTGCTGGAAAAGAACCAGATCTATCTGGAATCAGAAAAAGCCAAGAAACAAAGACAACGTGATGCAAGCATAGAAGTACAGAAAATTCAGATCCAGCAAATG
Seq C2 exon
GCAGAAAAGAAGGCAAAAGAACAGCAGGAGAAGCAAGCAGACTTGGACTACAATGCTCAGAAAGAGCTTATTGCGCTCCATAAAGAACATGAATTCCAGAAGTATGCAAAGCAAGTAATTGAATCGGTGTCCACAACTACACATCATCTCTATCCTCTCCTGAAAGCTTCCAAAGAAATAACAGGACTTGGAGGTGGCCCATTTTCCAGAGGAAGTGAAGGAACAAATCCTGGTTTTCAAGCACAGGATGTTGCTGAGACCCAATTACCTTGTTGTAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824-'7-10,'7-8,8-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.446 A=0.618 C2=0.436
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(19.0=100)
A:
PF138681=Trichoplein=FE(16.1=100)
C2:
PF138681=Trichoplein=PD(12.5=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGAACACAGAGCCACT
R:
TCACTTCCTCTGGAAAATGGGC
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]